ENST00000440088.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000440088.1

Source

Gencode19

Same with

lnc-TMEM60-1:3

Classification

intergenic

Length

2029 nt

Genomic location

chr7-:77286977..77325582

Exon number

2

Exons

77286977..77288635,77325213..77325582

Genome context

Sequence
000001 TTCGGAGGTC AGAGCTCGGC GGGGTGCGGC TAGTGGCGGA GCGCGCTGCG AGGGGAGGGC TTTCCACTGT CGCTGGCGTG 000080
000081 AACTCGCGTG CCCGGTGGGT ATCAGGGAAG AACCCCCGCC CCGGACCCCC AGATCTGCCA TGGCCGAGGT AGCGATCGTC 000160
000161 TCTGCGGCCA CGAAGACTGT TTTAACTTGT ACCACTTTCC CTTCCATTTT TCCTGGGGTG CCTCTCACCC TGCATCTGCG 000240
000241 CGTTCAGCAA GCTGGATTTC GGGAATGCTC AGTTCAGAAG AGAAAAAATT GCCGGGAATC AAGTCCTTCT TTTTGTTAGT 000320
000321 CGGTAGTCGA TTGATGGGAA GTGTTCAAAA TCATTCGATG TGGTGACAAG GTATCACCAG TCTGTGGGTA CAAAAGGAGA 000400
000401 GTAACATGAA CGATTCAAAT TCCACTGGCT CTTGTTCCCA TGGATTCACA GAAGTTCAGC CCCATTTCAA AACTTCACAT 000480
000481 TTGCTTCTGG GAAGCCCATT CTGGAAAGTT TCTCTGTGGC CCTCTCCAGA AGGCAGCGCG ACTTCCACCC AGCAACACAA 000560
000561 GTCTCTGCAG CACCTGCCCC AGCAGCGCCA GCTGAGCCCC GGAAGCTGGG AAGGCTTAAG CTGACTCTTC TGCTGCACAT 000640
000641 AGCAAAAAAT GGTCATTTCT GTAGTTGCAG CTCCAGATCT ACAATAATCA ATCTATATCC ATATTTTATG GGGTTTTTTT 000720
000721 GAGACAAAGT CTTGCTCTGT TACTCAGGCT GGAGTGCAGT GGCATTATCA TCATTCACTT GTAGCCTTGA CCTCCCTGGC 000800
000801 TCAGGTGATC CTGTCACCTC AGCCTTCCAA GTAGCTGAGA CCACAGGCAT GCACCACTAA GCCTGGCTAA TTTTTCAATT 000880
000881 TTTATTTTTC GTAGAGACAG GGTCTCCCTG GGTTGCCCAA ACTGGTCTTG AATTCCTGGG CTCAAGCAAT CCTCCTGTCC 000960
000961 CGGCACCCCG AAGTGTTGGG ACTACAGGCA TGAGCCACTG TGCACAGCCC TTTTTGTTTT TGTTTTTGTT TTTTTTTAAA 001040
001041 GGTAATTTCC CAGTGGAATC CTCGAGATTT CTTCACGTTT TTGGAAAAAT GAGTTACATT TTAGATTGTT TTCCTTTTTG 001120
001121 GAATTTAATG GTATACATTA TATTACATAG CTATGTTGAG CTCTATTTCT ATTACACTAA AAAGTAGGCT AATTGTCTTA 001200
001201 ACTTTCATCA GTAATGACAT TAAATGTGTG AAGATTATAC TTGGAATAAA GCACTTGGAT TCATTCATTT CTTCAGTAAA 001280
001281 TATTTATTGA GCACTAGTAT GTTCCAACGA GTGTCTGTCT ACATTCTGGG GACAAGTGAT AACTAAATCC CTGTCCTCGT 001360
001361 GGAGAGTTAA CAATCAACAA ACTAACAAAC ATTTAATTTA TGTCATCAAC TCATTTCCAC AAATATAACA ACATCTTGAC 001440
001441 TTCAAGTTTC CTGAGTTTCT GGTCTAAAGA ATTGCTACCT TCAAGAGCTC AAATCATTTG TTGGGGAGAG AGGCCTGTGA 001520
001521 TATATTTTCT CCTTTACAAT GAAAGTAGCT GTAAAAAGAG GAAGAGAAAT TCTGAGGGTA AAGATAAAAA ATGTTGAAAT 001600
001601 CTTCTTTCTG GATTTCAGAT TGAGTCTCTT GCCCTAATTG ATGCAATTTA CACTCCATGC ATCTCCTTCC CTGGACCTTC 001680
001681 TCCAGTTCTT GGGGACTACA GATGAACTTA CTTTTAATGC ATTTTATGGC ATTTGGAGGC CCTCCAGTGG ACAAATACTA 001760
001761 TACCTGAAAA AAATCCTTTT GCTGTGCTAA AGTGTTCAGG TGTGAAGTGT ACTCATGTTT GCAAATCACT TTGAAATATA 001840
001841 TAAACAAAAA TGAATTAATG GATGAATAGA GTGATGCATA GATCATTAGA CATGTGATAA AAATAACTGT TAATTGTAGA 001920
001921 ATCTAGATGA TGAGTATATT ATATGATATG GCCCACTGTA TAATTCTTTC AACTTTTCTG TTTGAATGTT TGATAATAAA 002000
002001 ATATTGAATA AAAATCTTTT TGCTAAAGA
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Predicted Small Protein

Name ENST00000440088.1_smProtein_989:1186
Length 66
Molecular weight 8013.4405
Aromaticity 0.292307692308
Instability index 58.7786153846
Isoelectric point 8.64141845703
Runs 10
Runs residual 0.00355769230769
Runs probability 0.0553259141495
Amino acid sequence MSHCAQPFLFLFLFFFKGNFPVESSRFLHVFGKMSYILDCFPFWNLMVYIILHSYVELYF
YYTKK
Secondary structure LLLLLLHHHHHHHHHHLLLLLLLLLEEEEEELLEEEEELLLHHHHHHHHHHHHHHHEEEE
EEEEL
PRMN LLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLL
LLLLL
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