ENST00000440723.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000440723.1

Source

Gencode19

Same with

lnc-IQCF2-1:1,NONHSAT089888

Classification

antisense

Length

2000 nt

Genomic location

chr3+:51907612..51909783

Exon number

3

Exons

51907612..51907768,51907852..51908314,51908404..51909783

Genome context

Sequence
000001 GAAACCAAGA CAACCCCTGC TGATTCCTCA CAGCTGACTT GTGACATGCC TAGTATTTCC CATCATTATC TCAAACAATG 000080
000081 ACCTCCTGAA AATACATCTG ATGAAGAGAG CTGGGGACAC AGATATAGCA GACCTGGTCA TTCTTTTAAT GGAAGGGTGG 000160
000161 CCCTCAATAA AGACACGGGA ATGGCAGCTG TGCCAGCGCC AATAGACCTG GATGATGCGG ACAGCGTTGA GCAAACGACA 000240
000241 GTAACGCTGG CGGACACACC ACATGCGGAC CCAGGACTGC AGCCTGACTG CTGCCCATTC CTGCTGCACA TAGAACTCCA 000320
000321 ACACCATCCT CCGCCTCTTT GCCAGCAGCT TCTCCAGCAC CTGCCTCCAC CAGCACTGAA TGATCCAAGC CCTGAGGGCT 000400
000401 GCATGCAGCA GTGTGCGTCG CACCAGCATG CCCCGCCACC AGGCCTGGAT GAAAACAGCT GCAGACCTTT CTGTCATGAT 000480
000481 GGTCTTCTCT TCTGGGCCTT ACAAGAGAAA ACAGACACAC TCAGGGTATG CTAGGAAGGG GCCCTGATCC TCTATCAATG 000560
000561 ATGGCTCCTT CCTCTAAAGT TCAGCACTGG GCAGGGCAAC AGCTGAACCC AGGAGACCAG GTGTACATCT GCCCTAGCTA 000640
000641 CCTCATTCCA TTTTCCATGG ACCTTGCTGG CCAGTCTAGA GCAAGAACAC TGTGACTTAG AGGTAAAAGA GCTGCCATCT 000720
000721 ACCTGGGATC CATGACTCTT CCCTTCAGAG CCCTCCCATC CGCTGAAGAA GTGGTGTCCT TTGCTCCTCC TGCCCTCTTT 000800
000801 ACTCTGACTT CAAGTCAAAC CCACAAGCTG CTGTGTTCCT TCCTCCTCAC CAAAGTGGTA ACAGATTCCT CCACCTCACA 000880
000881 CACATTGTGA ACAGCTTGAA CTTCAGCTAT GCATGCATCT GTACAAACAT GCACACTCCA CACACTAACA CACATTTTGC 000960
000961 CCCTTGGTCC TGCATTCCCC ACAGTCCCCA CTTGCAGCCC CCAGCCCTAT ATGGTCCGGG ATCACACTCC TCTGCCCCAC 001040
001041 TCCTGGCCAC AGTCTCCACT CCGTATCTCA GCCAGACTCA CATCTCTCCG CCTGACAAGA AAATGGGGGC AAGAGACAGC 001120
001121 CAGTCCCCAT TCATTCCAGC TCTGCATACC CTGACGTTTC ACCCCAGTTT TTCTGGAACA CCCTGATTGA TGTCAGGTAA 001200
001201 TGAGGACAGG TGCCTGTTTC CCTCACTGAA GCCACTCTTT GTACAATAAA TTACAGGGTC ATAGATCTTT GAGTCACTCT 001280
001281 GCTGGACCAC AGGGGTCAGA GATGTCACTA GTTAAGGCTC TCTGGACCCA GCCACTCACG GAGTTGTGGG TAAGGGTGTG 001360
001361 GCCTGGTAGG GGTGAGGGTG TTGGGGGTGG AGTCGCTTCC CTCTTCTCCC CTTTGTTCCT TCCAGCTCTG TTCTATCGAT 001440
001441 GTGATTTCAT CATTATGTTT AATGATCATT TAAAACAGCT TGCCATCCTT CTGGAATCAG AGTGTATGGG GGGAAATAGG 001520
001521 GAAGAAAGTG AAAGGTGCTC TCCCACTGCT AGGTGCCAAG TCAAACACCA TTCTCACTGT TTCTAGACAG CTTCCTGGCT 001600
001601 TTCTCTAGGA CTTCAAACAT GGAGGGGGGT CCTGTCATGA GTAACTGTGG GGAACTTACT CTCCCCTCAG AAAGCTAGTG 001680
001681 TGGTTCTGAC TGCCTCTTAC AAAACATCTG ACTGGGGACA GGTCGTAAAA TTCGCACAGG TCTGGACTTT ACTAAATTAC 001760
001761 CCATGGTTAG GGGCTAGATG GTCCCATCAC CCTCCGGCCC GCACTCCTCC GATCAGGACT CCAACAGGAA GAGTGGAGGA 001840
001841 AGGGCGGGAC CTGTGATGTC ATAAGGGCAC CTGTGATGCA GGCACCAGGA CAGCTTCCAG CATATGAGCC TCTTCTAAGG 001920
001921 AAAACCTAGA AGACCCCAAG TACTGACCCA TTGACACAAA GGTATATAAT GCTGCTCATT AAAATCTGGC TGGTATTCAT 002000
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Predicted Small Protein

Name ENST00000440723.1_smProtein_1301:1585
Length 95
Molecular weight 10651.2961
Aromaticity 0.106382978723
Instability index 58.4394680851
Isoelectric point 6.88275146484
Runs 14
Runs residual 0.0201202590194
Runs probability 0.0507986978575
Amino acid sequence MSLVKALWTQPLTELWVRVWPGRGEGVGGGVASLFSPLFLPALFYRCDFIIMFNDHLKQL
AILLESECMGGNREESERCSPTARCQVKHHSHCF
Secondary structure LLHHHHHHLLLLLLEEEEEELLLLLLLLHHHHHHHLLLLLLHHHHLLLEEEEHHHHHHHH
HHHHHHHHLLLLLLLLLLLLLLLEEEEELLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLL
LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
PiMo ooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiiii
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