ENST00000440723.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000440723.1 |
Source |
Gencode19 |
Same with |
lnc-IQCF2-1:1,NONHSAT089888 |
Classification |
antisense |
Length |
2000 nt |
Genomic location |
chr3+:51907612..51909783 |
Exon number |
3 |
Exons |
51907612..51907768,51907852..51908314,51908404..51909783 |
Genome context |
|
Sequence |
000001 GAAACCAAGA CAACCCCTGC TGATTCCTCA CAGCTGACTT GTGACATGCC TAGTATTTCC CATCATTATC TCAAACAATG 000080
000081 ACCTCCTGAA AATACATCTG ATGAAGAGAG CTGGGGACAC AGATATAGCA GACCTGGTCA TTCTTTTAAT GGAAGGGTGG 000160 000161 CCCTCAATAA AGACACGGGA ATGGCAGCTG TGCCAGCGCC AATAGACCTG GATGATGCGG ACAGCGTTGA GCAAACGACA 000240 000241 GTAACGCTGG CGGACACACC ACATGCGGAC CCAGGACTGC AGCCTGACTG CTGCCCATTC CTGCTGCACA TAGAACTCCA 000320 000321 ACACCATCCT CCGCCTCTTT GCCAGCAGCT TCTCCAGCAC CTGCCTCCAC CAGCACTGAA TGATCCAAGC CCTGAGGGCT 000400 000401 GCATGCAGCA GTGTGCGTCG CACCAGCATG CCCCGCCACC AGGCCTGGAT GAAAACAGCT GCAGACCTTT CTGTCATGAT 000480 000481 GGTCTTCTCT TCTGGGCCTT ACAAGAGAAA ACAGACACAC TCAGGGTATG CTAGGAAGGG GCCCTGATCC TCTATCAATG 000560 000561 ATGGCTCCTT CCTCTAAAGT TCAGCACTGG GCAGGGCAAC AGCTGAACCC AGGAGACCAG GTGTACATCT GCCCTAGCTA 000640 000641 CCTCATTCCA TTTTCCATGG ACCTTGCTGG CCAGTCTAGA GCAAGAACAC TGTGACTTAG AGGTAAAAGA GCTGCCATCT 000720 000721 ACCTGGGATC CATGACTCTT CCCTTCAGAG CCCTCCCATC CGCTGAAGAA GTGGTGTCCT TTGCTCCTCC TGCCCTCTTT 000800 000801 ACTCTGACTT CAAGTCAAAC CCACAAGCTG CTGTGTTCCT TCCTCCTCAC CAAAGTGGTA ACAGATTCCT CCACCTCACA 000880 000881 CACATTGTGA ACAGCTTGAA CTTCAGCTAT GCATGCATCT GTACAAACAT GCACACTCCA CACACTAACA CACATTTTGC 000960 000961 CCCTTGGTCC TGCATTCCCC ACAGTCCCCA CTTGCAGCCC CCAGCCCTAT ATGGTCCGGG ATCACACTCC TCTGCCCCAC 001040 001041 TCCTGGCCAC AGTCTCCACT CCGTATCTCA GCCAGACTCA CATCTCTCCG CCTGACAAGA AAATGGGGGC AAGAGACAGC 001120 001121 CAGTCCCCAT TCATTCCAGC TCTGCATACC CTGACGTTTC ACCCCAGTTT TTCTGGAACA CCCTGATTGA TGTCAGGTAA 001200 001201 TGAGGACAGG TGCCTGTTTC CCTCACTGAA GCCACTCTTT GTACAATAAA TTACAGGGTC ATAGATCTTT GAGTCACTCT 001280 001281 GCTGGACCAC AGGGGTCAGA GATGTCACTA GTTAAGGCTC TCTGGACCCA GCCACTCACG GAGTTGTGGG TAAGGGTGTG 001360 001361 GCCTGGTAGG GGTGAGGGTG TTGGGGGTGG AGTCGCTTCC CTCTTCTCCC CTTTGTTCCT TCCAGCTCTG TTCTATCGAT 001440 001441 GTGATTTCAT CATTATGTTT AATGATCATT TAAAACAGCT TGCCATCCTT CTGGAATCAG AGTGTATGGG GGGAAATAGG 001520 001521 GAAGAAAGTG AAAGGTGCTC TCCCACTGCT AGGTGCCAAG TCAAACACCA TTCTCACTGT TTCTAGACAG CTTCCTGGCT 001600 001601 TTCTCTAGGA CTTCAAACAT GGAGGGGGGT CCTGTCATGA GTAACTGTGG GGAACTTACT CTCCCCTCAG AAAGCTAGTG 001680 001681 TGGTTCTGAC TGCCTCTTAC AAAACATCTG ACTGGGGACA GGTCGTAAAA TTCGCACAGG TCTGGACTTT ACTAAATTAC 001760 001761 CCATGGTTAG GGGCTAGATG GTCCCATCAC CCTCCGGCCC GCACTCCTCC GATCAGGACT CCAACAGGAA GAGTGGAGGA 001840 001841 AGGGCGGGAC CTGTGATGTC ATAAGGGCAC CTGTGATGCA GGCACCAGGA CAGCTTCCAG CATATGAGCC TCTTCTAAGG 001920 001921 AAAACCTAGA AGACCCCAAG TACTGACCCA TTGACACAAA GGTATATAAT GCTGCTCATT AAAATCTGGC TGGTATTCAT 002000 |
Predicted Small Protein
Name | ENST00000440723.1_smProtein_1301:1585 |
Length | 95 |
Molecular weight | 10651.2961 |
Aromaticity | 0.106382978723 |
Instability index | 58.4394680851 |
Isoelectric point | 6.88275146484 |
Runs | 14 |
Runs residual | 0.0201202590194 |
Runs probability | 0.0507986978575 |
Amino acid sequence | MSLVKALWTQPLTELWVRVWPGRGEGVGGGVASLFSPLFLPALFYRCDFIIMFNDHLKQL AILLESECMGGNREESERCSPTARCQVKHHSHCF |
Secondary structure | LLHHHHHHLLLLLLEEEEEELLLLLLLLHHHHHHHLLLLLLHHHHLLLEEEEHHHHHHHH HHHHHHHHLLLLLLLLLLLLLLLEEEEELLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiiii iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii |