ENST00000442456.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000442456.1 |
Source |
Gencode19 |
Same with |
lnc-AC007405.2.1-1:1,NONHSAT075417 |
Classification |
intergenic |
Length |
2026 nt |
Genomic location |
chr2-:171579719..171627276 |
Exon number |
7 |
Exons |
171579719..171580103,171583795..171583838,171584169..171584298,171586878..171587507,171590389..171590504,171597142..171597797,171627212..171627276 |
Genome context |
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Sequence |
000001 ACACCCTCGG ATTGACGTGC GCACGCGCAC CGGTTACCTT CAGGAGCGCC GAAGAAGGAA AGAAGAACAC AGAGCCCGAG 000080
000081 GCAAAGCTTA AGTGCTTACG CTTTTGTCGG GAGGTACAGA CCCAGCTCTG CGAGAGCCAG GGGAAAAGGA AGAGAGGCAG 000160 000161 GGAAGGAATG GCAGCAAGTA CAAGGTGATG AATGACTGCA CTGGCCATTG CTTCATGAAG AGCCACGAAA AAACAGAGCC 000240 000241 GGTTTCTCAG CAGGTGGCTG GCTGCTCAGT CACAAAGGAC CTCTTTGGAC AGGCTTTATG GAAATACTGT GCCTAGGACA 000320 000321 GTCGCTCAAA GGCAGGAGGG AGAGAAAATG CATCTGCAAG CTCACTTTGT CTTCTTTCTT CTGCTGGTCA AAATTTGCTG 000400 000401 GCTGGGGCAG TTAACGCCCT CACACATCCG AGTTGTGTCA CCTGGCCCCT TTGGTAGCCA CTGGGGAAGC CAGATCTAGG 000480 000481 CATGTGGCCT GATGGCTCCT GCGGTGGAAC CACATGCTCA CACTCAGTCA GTCACCACTG GGATGCCCTG GGCAGGGCAG 000560 000561 GCTGAGTGGC TGGGAGATAG CTGAGCCTAA GATATCTAAG CAAGCACCTG TGATGTATGC ACTGCAGTGT CCAAATGTGA 000640 000641 AAAAGCAAGA AAGGGAGATA GAAGCATATT TTTTTCTGGA GAGAAGGAGG AAACCACCAG GAGAATACAA ACAGAAAAAA 000720 000721 GACATGCTCA TCATGCCCTG CAAACTCCTA TGAACTGGAA CTACAGCAGC TGTTCTGCCA GGGACAGGTT CTTCTCTAAA 000800 000801 GTTCCAGCTC TCTGGAGGGA GAAAGCCCTG ACTTTGGATG GAGTTGAGCT CTGTCGCCCA GGCTGGAGTG CAGTGGCACC 000880 000881 ATCTCAGCTG ACTGTGACCT CCGCCTCCTG GGTTCAAGTG ATTCTCCTGC ATCAGCCTCC CGAGTAGCTG GGACTACAGG 000960 000961 TGCACACCAC CATGCCCGGC TAATTTTTGT ATTTTTAGTA GAGACGGGGT TTTGCCATGA TGGCCAGGTT TGGTCTCAAA 001040 001041 CTCCTAACCT CAAGTGATCC ACCCTCCTCA GCCTCCCAAA GTGCTGGGAT TACAGGCGTG AGCCACTGCG CCCCGCCTAC 001120 001121 TTGAATTTTT TTTTTTTTTT TTTTTTTTGA GACAGAGTTT TGCTCCTGTT GCCCAGGCTG GAGTGCAACG GCATGATCTC 001200 001201 GACTCACTGC AACCTCTGCC TCCTGGGTTC AAGTGATTCT CCTGCCTCAG CCTCCCAAAT AGCTGGGATT ACAGGTGCCC 001280 001281 ACCACTGTGC CTGGCTGATT GTATTTTTAG TAGAGATGGG GTTTCATCAT GTTGGTCAGG CTGGTCTTGA ACTCCAGACC 001360 001361 TCAGGTGATC GGACTGCCTC GGCCTCCCAA AGTGCTGGGA TTACAGGCAT GACCCACTGT GCCCGGACCT GCTTGAATTT 001440 001441 TTATGATGAG CATGTTGGCA GATCACGACT GCCAGCTCCG TGACAGCAAG AACCTTGTAT GACTTTTTCA TGATGGATGT 001520 001521 TCATCTGTGC CATCTGTAAA TATTGAATAA ATATTTGTGG AATACATGAA TCTAAAAGTG AATGGAATGA TAAAGAGGGA 001600 001601 AAGGGTCATG ACATCTACTA CAGCATTTGG CACAGACCCA GCTGTCTGCA GTACTATCAA GAGATGACAT GGACTTCAAG 001680 001681 GATCAAACAG GGGAGAAAAA GGCTTAAAAG AAAAACAAGT CTCCATCAAA GGTAATAACC ACAATGAGAA CTATACATAG 001760 001761 CTATGTGCTT ATAGGTCTTA GTTCACATTC CCCTCATTAA AATTATAGCT CAAGAAATAA AGGGCTGTTT AATGACTTGG 001840 001841 GTATATAAAT ATACTTCATT TGTATATTTT TTACTTGCTA AAATCTATCC AAATTGGTAT TACCTCAAAC CATAATCTTC 001920 001921 TACTGTATTT TATAATTTTA CTTTATTGCC ATGTATTTTT CCCACTGATG TTCACAAATT CACAGGAAAC ATCAGCCATG 002000 002001 TACTAAATAA AATATGAATT GAATCG |
Predicted Small Protein
Name | ENST00000442456.1_smProtein_749:946 |
Length | 66 |
Molecular weight | 7332.3167 |
Aromaticity | 0.107692307692 |
Instability index | 46.7723076923 |
Isoelectric point | 7.82696533203 |
Runs | 13 |
Runs residual | 0.0497115384615 |
Runs probability | 0.0472667237374 |
Amino acid sequence | MNWNYSSCSARDRFFSKVPALWREKALTLDGVELCRPGWSAVAPSQLTVTSASWVQVILL HQPPE |
Secondary structure | LLLLLLLLLLHHHHHLLLLHHHHHHHHLLLLEEELLLLLEEELLLLEEEELLLLLEEEEE ELLLL |
PRMN | - |
PiMo | - |