ENST00000442684.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000442684.1 |
Source |
Gencode19 |
Same with |
lnc-C4BPA-1:1 |
Classification |
intergenic |
Length |
945 nt |
Genomic location |
chr1+:207352641..207357407 |
Exon number |
4 |
Exons |
207352641..207352840,207354720..207354887,207355893..207356068,207357007..207357407 |
Genome context |
|
Sequence |
000001 CGGTGTCAGC CTTTTCTTTC CTTGCTTTAA CTCAGACCTA CTGAACCACC TCTCTGTTGA AATACCACGA AGGAGAAGAA 000080
000081 ATAAGCATCT AAGGTGATAA ACATCTGTCT CTTATCAGGA TAAGACACTG AAAATGTTAT TATTATGGAA GTATCTTCAT 000160 000161 TATGAAAGAC TCTTCACATC AACACGATGG TGATTACTCG TTTGCAGTTA CCCTCCCAGT ATTGCCCATG GACACTACAA 000240 000241 GGAAGTTATT TTAATAACTC CTTATCCTGA GGCTACATAT GAATGTGATG AAGGATATGT TTTGGCTGGA TTTGCTACAA 000320 000321 TCTACTGCAA GTCTTTTCAC TGGCAACTTG CACCTCCTCA ATGTAAAGCT CTGTGTCTGA AACCAGAAAT AGTGAATGGA 000400 000401 AGGCTGTCTG TGGATAAGGA TCAGTATGTT GAGTCTGAAA ATGTTACCAT TGAATGTGAT TCTGGCTATG GTGTGGTTGG 000480 000481 TCTCAAAAGT ATCACTTGCT CAGAGAAGAG AACCTGGTAC CCAGAAGTGC CCAGGTGTGA GTGGGAGGCA CCTGAAGGTT 000560 000561 GTGAGCAAGT GCTCACAGGC AGAAAACTCA TGCAGTGTCT CCCAAGCCCA GAGGATGTGA AAGTGGCCCT GGAGGTGTAT 000640 000641 AAGCTGTCTC TGGAGATAAA ACAACTTGAA AAAGAGAGAG ACAAATTGAT GAACACCCAT CAGAAATTTT CTGAAAAAGA 000720 000721 GGAAATGAAG GACTTATTTT TCCCTTCAAA TCAACATACA GAATCTTCAC TCATCCACCC TACTCTTCCT TGAGCACCAT 000800 000801 CACTCTCATA AGGGTCTGGG CTAGGAGAAC TTTCTTATTA CTGCCAGAGA AAAATGTGTA ATTATTGGTA ATCTAGCCTT 000880 000881 TTGTAGCTCA AATGTCCAGT TTCCTGGACT TGAAGTGCTG GTTAATTAAA TAATTATTTA CCAAA |
Predicted Small Protein
Name | ENST00000442684.1_smProtein_395:619 |
Length | 75 |
Molecular weight | 8200.7877 |
Aromaticity | 0.027027027027 |
Instability index | 45.35 |
Isoelectric point | 9.95111083984 |
Runs | 14 |
Runs residual | 0.046539222149 |
Runs probability | 0.0440924117395 |
Amino acid sequence | MEGCLWIRISMLSLKMLPLNVILAMVWLVSKVSLAQRREPGTQKCPGVSGRHLKVVSKCS QAENSCSVSQAQRM |
Secondary structure | LLLEEEEEEHHHHLLLLLHHHHHHHHHHHHLLLHHHLLLLLLLLLLLLLLLEEEEEEELL LLLLEELLLLLEEL |
PRMN | LLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLL |
PiMo | oooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii iiiiiiiiiiiiii |