ENST00000443779.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000443779.1 |
Source |
Gencode19 |
Same with |
lnc-HRCT1-1:1 |
Classification |
intergenic |
Length |
1612 nt |
Genomic location |
chr9+:35909480..35911683 |
Exon number |
2 |
Exons |
35909480..35909561,35910154..35911683 |
Genome context |
|
Sequence |
000001 AACCAGGACA GAGGCTGCAG CACCCAGGGA GGAACGCCGT GGTCCCTGGG ACGGCCACCA GGCCAGGAGG CTGCAGCACC 000080
000081 AGGGAATCTG TGCTCACGTC TTCCAGGACA GTGCTTCTTC TAGAAGCTGA CATGGAGCTG ACCACAGCTC TTGGAGGCAT 000160 000161 GGCCTGAGGC TTAGAAAATA GACAGAGATC ATCTGAGATT TCAGCAGTGG GGCCACGTGG CAGCGCCCGA AGGCCTGGAG 000240 000241 CAGGAGCGAC CCAGGGACTC AGAGCAGCAT CTTCTTAGGA GACGGAAGGA GAGCCGCCGG AGGAGCACGG GGCACCTGCG 000320 000321 ATCGCGAAGA GCCTCCTGTT CTGGATGGGA GCGAAGGCTC CGAGAGGACC TAAGGTTGCT CAGTGGGCCA TGGAAACGGC 000400 000401 AGTGATTGGG GTGGTGGTGG TGCTGTTCGT GGTGACTGTG GCCATCACCT GCGTCCTCTG CTGCTTCAGC TGTGACTCAA 000480 000481 GGGCCCAGGA TCCTCAGGGG GGTCCTGGCC GCAGCTTCAC GGTGGCCACG TTTCGCCAGG AAGCTTCTCT CTTCACGGGG 000560 000561 CCTGTTCGCC ATGCCCAGCC AGTGCCAAGT GCCCAGGACT TCTGGACCTT CATGTGACGC CCGAGTCCCC AGGATTTGCT 000640 000641 GTGCTGATGG GTCAGACTCA CCCGCTCCTC AGCAAGCCTT CCCTGGCCTT CCCCTCCTCC CAGGGCCTTC TCCCTGTCCT 000720 000721 TCCCCTCCAG TAACCTGTGA ACTTCCCGTC TCCTCCCATT CCAGCCTTCT GTGCCCTCCA GCCTCAGGGA TCCTTGTTAT 000800 000801 TGGGACAGCC CAGCTGGGGT TGACCCACAG GATGGGGCTT AGGAGAGCTC TGAGGAGTGA GTGAACAGAC AGCGCCGGAG 000880 000881 TGCACGGTGG GCCGGCTCTG CTGATCTACA CCAGGAACTG AAATATCACT GGAATTTATT GTAAACGGTG TGCCTATGAT 000960 000961 GCTGGTTCTG TTGCCACCTG GGCACGCAGC ACCCTCAAGT GGACATTTCT AGAAACCGCT TCTTACTTGC TCCTAATTGA 001040 001041 TTACTTTTGC ACATTGCACA GAACCCAACC TCGAGGCCTG CTCCCTGCCA GTTGCCTGAA ATCAGCCCTG AAATTCTGAA 001120 001121 ACCAAAGAGC TGCTTCCTGA GAACAAGTTA TTTACCTTAG AATTGAAAAT GTATATCCTT TTATGGGCCT TTCCAAATCT 001200 001201 GATTAGAAAA ACCACAAAAG GAAACAGAAG AGAAAATAAG AGCCACAGAA AGTACAATAT GTTTTATTAA CAGGAAAGCC 001280 001281 AGAAATAAGA TATTTTAAAC ATATTTTTAA TGAGACTTTA TTGCTATATT CCAACAGGTC ACTCCTATTC TTAGAGAATG 001360 001361 TGAATGACTT GTGTCACTTC GGAGTGACAG AAAAATCAGG AACTGAAAGA TAATTCCAGA CAAGTTAAAA TGTTATGTTA 001440 001441 CATTCAAAGC TCTTGTTTTC ATCACAAATA AGGGGATATT CAGTTTTTAT TAACAGAAAA CCCATTCTCC CATGGCCATG 001520 001521 GAATAAATGC CATGCTATAT TTAAGGAGTT TGGTTTGAAG GGTGCAAAAT TGTGAGCCTC CTGGCTCTTA TGTCTGTATC 001600 001601 CAGCCCTGAA TA |
Predicted Small Protein
Name | ENST00000443779.1_smProtein_344:616 |
Length | 91 |
Molecular weight | 9632.1163 |
Aromaticity | 0.1 |
Instability index | 44.0366666667 |
Isoelectric point | 8.50531005859 |
Runs | 11 |
Runs residual | 0.0176366843034 |
Runs probability | 0.0513481395834 |
Amino acid sequence | MGAKAPRGPKVAQWAMETAVIGVVVVLFVVTVAITCVLCCFSCDSRAQDPQGGPGRSFTV ATFRQEASLFTGPVRHAQPVPSAQDFWTFM |
Secondary structure | LLLLLLLLLHHHHHHHHHLEEEEEEEEEEEEEEEEEEEEEEELLLLLLLLLLLLLLEEEE EEEEEEEEELLLLEEELLLLLLHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTooooooooooooooooooooooo oooooooooooooooooooooooooooooo |