ENST00000443779.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000443779.1

Source

Gencode19

Same with

lnc-HRCT1-1:1

Classification

intergenic

Length

1612 nt

Genomic location

chr9+:35909480..35911683

Exon number

2

Exons

35909480..35909561,35910154..35911683

Genome context

Sequence
000001 AACCAGGACA GAGGCTGCAG CACCCAGGGA GGAACGCCGT GGTCCCTGGG ACGGCCACCA GGCCAGGAGG CTGCAGCACC 000080
000081 AGGGAATCTG TGCTCACGTC TTCCAGGACA GTGCTTCTTC TAGAAGCTGA CATGGAGCTG ACCACAGCTC TTGGAGGCAT 000160
000161 GGCCTGAGGC TTAGAAAATA GACAGAGATC ATCTGAGATT TCAGCAGTGG GGCCACGTGG CAGCGCCCGA AGGCCTGGAG 000240
000241 CAGGAGCGAC CCAGGGACTC AGAGCAGCAT CTTCTTAGGA GACGGAAGGA GAGCCGCCGG AGGAGCACGG GGCACCTGCG 000320
000321 ATCGCGAAGA GCCTCCTGTT CTGGATGGGA GCGAAGGCTC CGAGAGGACC TAAGGTTGCT CAGTGGGCCA TGGAAACGGC 000400
000401 AGTGATTGGG GTGGTGGTGG TGCTGTTCGT GGTGACTGTG GCCATCACCT GCGTCCTCTG CTGCTTCAGC TGTGACTCAA 000480
000481 GGGCCCAGGA TCCTCAGGGG GGTCCTGGCC GCAGCTTCAC GGTGGCCACG TTTCGCCAGG AAGCTTCTCT CTTCACGGGG 000560
000561 CCTGTTCGCC ATGCCCAGCC AGTGCCAAGT GCCCAGGACT TCTGGACCTT CATGTGACGC CCGAGTCCCC AGGATTTGCT 000640
000641 GTGCTGATGG GTCAGACTCA CCCGCTCCTC AGCAAGCCTT CCCTGGCCTT CCCCTCCTCC CAGGGCCTTC TCCCTGTCCT 000720
000721 TCCCCTCCAG TAACCTGTGA ACTTCCCGTC TCCTCCCATT CCAGCCTTCT GTGCCCTCCA GCCTCAGGGA TCCTTGTTAT 000800
000801 TGGGACAGCC CAGCTGGGGT TGACCCACAG GATGGGGCTT AGGAGAGCTC TGAGGAGTGA GTGAACAGAC AGCGCCGGAG 000880
000881 TGCACGGTGG GCCGGCTCTG CTGATCTACA CCAGGAACTG AAATATCACT GGAATTTATT GTAAACGGTG TGCCTATGAT 000960
000961 GCTGGTTCTG TTGCCACCTG GGCACGCAGC ACCCTCAAGT GGACATTTCT AGAAACCGCT TCTTACTTGC TCCTAATTGA 001040
001041 TTACTTTTGC ACATTGCACA GAACCCAACC TCGAGGCCTG CTCCCTGCCA GTTGCCTGAA ATCAGCCCTG AAATTCTGAA 001120
001121 ACCAAAGAGC TGCTTCCTGA GAACAAGTTA TTTACCTTAG AATTGAAAAT GTATATCCTT TTATGGGCCT TTCCAAATCT 001200
001201 GATTAGAAAA ACCACAAAAG GAAACAGAAG AGAAAATAAG AGCCACAGAA AGTACAATAT GTTTTATTAA CAGGAAAGCC 001280
001281 AGAAATAAGA TATTTTAAAC ATATTTTTAA TGAGACTTTA TTGCTATATT CCAACAGGTC ACTCCTATTC TTAGAGAATG 001360
001361 TGAATGACTT GTGTCACTTC GGAGTGACAG AAAAATCAGG AACTGAAAGA TAATTCCAGA CAAGTTAAAA TGTTATGTTA 001440
001441 CATTCAAAGC TCTTGTTTTC ATCACAAATA AGGGGATATT CAGTTTTTAT TAACAGAAAA CCCATTCTCC CATGGCCATG 001520
001521 GAATAAATGC CATGCTATAT TTAAGGAGTT TGGTTTGAAG GGTGCAAAAT TGTGAGCCTC CTGGCTCTTA TGTCTGTATC 001600
001601 CAGCCCTGAA TA
[back to top]

Predicted Small Protein

Name ENST00000443779.1_smProtein_344:616
Length 91
Molecular weight 9632.1163
Aromaticity 0.1
Instability index 44.0366666667
Isoelectric point 8.50531005859
Runs 11
Runs residual 0.0176366843034
Runs probability 0.0513481395834
Amino acid sequence MGAKAPRGPKVAQWAMETAVIGVVVVLFVVTVAITCVLCCFSCDSRAQDPQGGPGRSFTV
ATFRQEASLFTGPVRHAQPVPSAQDFWTFM
Secondary structure LLLLLLLLLHHHHHHHHHLEEEEEEEEEEEEEEEEEEEEEEELLLLLLLLLLLLLLEEEE
EEEEEEEEELLLLEEELLLLLLHHHHHHLL
PRMN LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLL
LLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTooooooooooooooooooooooo
oooooooooooooooooooooooooooooo