ENST00000445070.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000445070.1 |
Source |
Gencode19 |
Same with |
lnc-FOXD2-3:1,NONHSAT003103 |
Classification |
intronic(AS) |
Length |
1807 nt |
Genomic location |
chr1+:48283738..48285909 |
Exon number |
2 |
Exons |
48283738..48283887,48284253..48285909 |
Genome context |
|
Sequence |
000001 GCATAAGGGG GCCTTTCAGC CGGCTTCAGG GGGCGGCCAG GCGGGCAGGC GTTGCGGGGG ACCGGCTCTG CCCCAGGCCT 000080
000081 GCCAGTATGG CCTGGCACCC ATGGGATGGA GGGCTGGGAG GCCCTGGTTG ACCTCTGGCT TGGACTCTGG GTTTGATGAA 000160 000161 GAGTTCCAGC GGAAGCATCA GCCAGTCATT AATTCCAGGG GAGGGTGCAC GTGGAACCAG AAGGGGTGGC TGGCCAGGCA 000240 000241 GGAGGCTGTC CCTCACCAGG GAGAGGAAAG AGCGCTCCTC TCTCCAGCCT TGCTGTGGCC TTTAACTTGC TTCACTGGGT 000320 000321 GTCCAGAATC ACAGGCGGGT GGAATGACAG CAGTTTGAAT GACACCTGGT AGGCAGACAG TTTGGTATTG AAGTGCTGGG 000400 000401 ATTTCACATC CTCTGGGTTG TCTCGCTGTG GCTCCGATGC CTTTGACGTG AACAGCTCAC AAGTCCATCA CTCGCATTCT 000480 000481 GTGGCGTCTG GCCATCTCCC AATTTGGAGT TTCTGATTCT GTGGTTAGAC CTTATGTTTC CAGGGCCTGG GCTTTTCATT 000560 000561 CTTTCTAATT TTTTAAAAAT GTATGATTAT TGTCTAGAGA CATTATTTTT AAAAAGTATA AACCATCCCA GTGCTGACAA 000640 000641 GCCTGTTGTG GGGAGGACTC AGCGTGATAA GGCATCTCAG GGTGCTGGCA TTTAGCCTCC AATACAATCT AGCAGGGCTA 000720 000721 GGGCACAGGG CCAGCGGCCA CCCTGCAGGC TCACAGGGAC AGGATTCCGC TCTGCAGTTA GCCCCAAGGA TGGGACTCTC 000800 000801 CAGCACTTTT CCCTCCAGTC GCTCCAGGGC GGGAGGATCA CGGCCCATGC CAGTGGAGTG TAAGGAACCC CCTGGAAAAG 000880 000881 CGGGGCGCTT GAATATCCTG AGTGTTTGGT CTGCAGTCAC CAACACATCG CTTTCCTGGA TCTGATTTTA TTTATTTTGA 000960 000961 TTGGATCTTT AACAGCTCTT TACAAGGCTG AAACCGAAGC CGCCTGAGGT CCCCAGGAGG CTTGCTAAAA CTTCAACTGC 001040 001041 ACCCAGTTTA GCAGAGCAAC TTGAAAGTTA ATCAGCGGTG AGGGACAATT TGCCTCATTA TTTCCAGCCC TGGAATTTGG 001120 001121 CGGCAGATGG AATTTGGGGC CTGGTGTGGA CACGGCAATG AACACAGCAA GGACTGTCGC CCCTTGGTAT GGCCTTGTGG 001200 001201 GGTCTGGGCC TGGATGGGCT GATACTCCCT CTGAAGACGG GCGGTGCCGG GAAGGATTTC CCACTTGAGA GAACAAGGGC 001280 001281 AATCAGGCTG CCCTATCTCA GGTCCAGGCC AGTGTGGAGT AATCCTTAGA TACACAGTTC TGAGCACGTA TTCGGGCTGA 001360 001361 ACCCTGCACT GGATTCTGGG GAAACAAGAG TGGAATCCGA TACAGTTGCA TCCAATATAG GACGCAGACC AGAGACACTG 001440 001441 GGGTAAATTC TCACAGGAGA GGAACACCTG TGGCTGGCAC CTTCTGCATG AATCTGCGAA AAACAAATCT GCCCCACTTG 001520 001521 CCCTCACTTT CTCAATAAGG TCCACTCAGA CCCTTGACTT TAATGTTAAC CCCCTCCCAG GCACTCCCAC CTCCACACTC 001600 001601 TGCCATACTC TCCACAGCAC ATAGCACTGA CCACCTTCTA ACACACTATG TTAGTTCCTC ACTTATCATG TTTATTGTTT 001680 001681 ATCACATCAC CTTCCACAGG AAGGTAAGAC CCTCCTTCCA TGAGGGCAGG AATGTTTGTT TTGTTCATTA GTCTATCTCC 001760 001761 AGCCCCAGCA CATATGATGC ACTCAATAAA TGTCGTGTGA ACAAATG |
Predicted Small Protein
Name | ENST00000445070.1_smProtein_1562:1750 |
Length | 63 |
Molecular weight | 7064.0987 |
Aromaticity | 0.0967741935484 |
Instability index | 55.7241935484 |
Isoelectric point | 9.18768310547 |
Runs | 10 |
Runs residual | 0.00764976958525 |
Runs probability | 0.0353559441795 |
Amino acid sequence | MLTPSQALPPPHSAILSTAHSTDHLLTHYVSSSLIMFIVYHITFHRKVRPSFHEGRNVCF VH |
Secondary structure | LLLLLLLLLLLLLEEELLLLLLLLHHHEEELLLEEEEEEEEEEEEEEELLLLLLLLEEEE EL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLL LL |
PiMo | ooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiii ii |