ENST00000446693.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000446693.1 |
Source |
Gencode19 |
Same with |
lnc-VAV3-2:3,NONHSAT004931 |
Classification |
intergenic |
Length |
554 nt |
Genomic location |
chr1-:106470246..106495516 |
Exon number |
3 |
Exons |
106470246..106470336,106494830..106494901,106495126..106495516 |
Genome context |
|
Sequence |
000001 GGTATGAAAG ATTGGAACTA CGCGGAACTC CAAATTCATA GTTGGTTCTC ACCATTAAAC ATTTGCTGAT TTCTGGGGAC 000080
000081 AGATAGGAAT TCTAATAGGC ATAGCTGGCA AAGTGAAGGG AAGTCTCCCA CAGTCTCATA TTACTTGAAA AACAAAGTTC 000160 000161 CATTAAAAAG AAGAAGATGG CTGTCAACAA ATTAGTAATA GGCAAATGGT GGATAGGAAG CAGGACTAAA TTGCAGCTCC 000240 000241 CACTCAGACA GAGAGTAGCT TGTGGAGACT CACATTGTGA ACTTTTGCTC CCAGAACTAC TGCAGGAACA TATGAGGAAA 000320 000321 GATGAGAGAA TCCACAGACT CTTTGAAGGA AGCAGATTGC TCCTGCAGGG CCTGGGAGAC AACCAAACAC TGGGTCCTTA 000400 000401 GGGAGAGGTG CCAGAGGAAT TGGAAAAAGG CCACAGGCAG AAGGAAGGCT CCAGCTAAAC TTGATTGACC CATCATTTGG 000480 000481 ATGACCCGAA ACCACAGATG CAATAGAAGA ATGGAACAAA TTTGTACATT TTGTCAATAA AAACTTTATC TTCA |
Predicted Small Protein
Name | ENST00000446693.1_smProtein_176:400 |
Length | 75 |
Molecular weight | 8513.9071 |
Aromaticity | 0.0405405405405 |
Instability index | 52.2256756757 |
Isoelectric point | 9.29779052734 |
Runs | 9 |
Runs residual | 0.0210283454186 |
Runs probability | 0.0471942530767 |
Amino acid sequence | MAVNKLVIGKWWIGSRTKLQLPLRQRVACGDSHCELLLPELLQEHMRKDERIHRLFEGSR LLLQGLGDNQTLGP |
Secondary structure | LLLLLEEEEEEEELLLLLLLLLLLLEEELLLLHHHHHLHHHHHHHHHHHHHHHHHHHHHH HHHHLLLLLLLLLL |
PRMN | - |
PiMo | - |