ENST00000446838.2

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000446838.2

Source

Gencode19

Same with

lnc-GCA-2:1

Classification

intronic(AS)

Length

2999 nt

Genomic location

chr2+:163625446..163654482

Exon number

5

Exons

163625446..163625498,163628441..163628501,163641107..163641246,163641503..163641670,163651906..163654482

Genome context

Sequence
000001 ATATTCAGAA CAGCTGCTTC TTTTTGGTTG CTGGTGGCAG GGATATTATG GAGGCAACAG ACGCATGAGA GTGAGGTATT 000080
000081 TATCTGAGGG CGATTGAAGT CACCAGCTTA ACAGTAGTGG AAAGACCTTA AGCCAGAGAA CTCCAGGTTC AAGAACCACC 000160
000161 ACCTGCAAAC TTGGCAAATT TGGACAAATG TCTCTCTGAG TTTCATTGTC TTCATCCACA AATAAAGCAA GATTACTTCG 000240
000241 CCTACAGAAT TGCGAAATTA TGACCAGACC ATGAGGGTAT GAAGGATGAG GAAAAGGGAG CAGTCATGGA GCTGTTTTGG 000320
000321 AGGGAGTCAT AATTCCTTAG ACCTCTGACA ACTGGAACTC TCAATCTGCC AGTGAAAGCT GACATGAGCC CAATAAGGAT 000400
000401 GGTCTTTTCT ATTCAAAGAT AGGGACACCC TCTTTTTAAA GGACATTCAA TTCAAATGTA TCTTCTCTGG TTAAAGTATG 000480
000481 GTGAAGTCTG TCCTGTGGGC ACTCCCCATT GACTCCTAGC AGCTCTTGAG CCCCATCTTC AGGATCCGTA CTTTGATAGT 000560
000561 CACTGACAAT TAGCTTTGAA AATCTATAGT TCCAATCCTG TGAAATGAGA AGAATGTTGA AGCTATAAAG GAGGTCTTTG 000640
000641 CCTGCATTCA GATTCTGACA CCAAAGACTC CTCTGATTAT ACTGAAGTAT GTAAGAAAAC CTTCTCTTGA AATCAAGGAC 000720
000721 CATTTCTCTT CATCTTATCT TGAGCTACAT ACCAAATATG AGTACACATA GTTAGGATTC AATAAATAAT TTAAGATACT 000800
000801 TGTGAACACC TTGCTCTGAC TGGTTCTATT TTTACATTCA GAGAGGAAAG CATCCTGTAT TCTCCCTATA AACAAATCTA 000880
000881 GGAGAATAGG GTCATGGACA TCCTATGTAC ACAGAATTAC AGTCCGATGT TGGGTATCTT ACTCCTGTGA AGTGAAGGGA 000960
000961 AATAGAAAAG TAAACAAAGA AGACCACAGT ATAAGATGTC ACCTTAAAAT ATAAACCTGA AGACAAGAAA AACCAGGCTC 001040
001041 AAGGAACAAA TGAGCAGGAA AGTTGAAATT CTAGAATACA TTTGTTTTAT ACCAATATTA TTTGCATCTT GTTTAAATGA 001120
001121 AAAGTTGTTT ACATACACAA TGGATGACTA CAAAGAAACA GCATGGAAAC TGGAATCAGA GGCCTGTGTC TGAATTTCAT 001200
001201 GTCTACCACT GAACAACTGC ATGACACTGG GAAATTTACT TAGTTTCTAT AGACCTCATT TTTCTTATCT GTAAAATGGC 001280
001281 TTCCACAATC TGAAACTCAA AGGTCTCTTG ACAAGATTGA ATGTGATAAT GCATGTAAGG GATCAGGACG AAACCCAGCA 001360
001361 CAAAAAAAGA CTGCAAGCCA CACTGTTTAC AAACACCGTT TCCAAGTAAA AAAAAAACCT GCTCATTGAA ACTGAAGGCA 001440
001441 CCAGTGTCTG TTGGGTTCAG CACGTAGTGA GACGCTCAAC TACCTGCCTC AGGTAAGCTT AGTGTGCTTA CGTACTTCAC 001520
001521 TAACGATAGC TAGTTTAGAG GTTCTTTCCT CGTAATTCAG GTGATATAAT TGCTCTATGG TTATGCCCTA CCCACCTTGT 001600
001601 CTTAAACAGT GCAAAATATG TGATATCATT ACACATTTCT TATCAGGAAA ATATTTCAAA GGGCAGGCAC TCTCTGTGTT 001680
001681 TCCTTAGTAA CAGCAGCTAT GTGGAGCATC TTCTGTATTA TGTTTAACAT GGTGCAAATA TGAACAAGTA ATCACAACTC 001760
001761 CTGTGCACCA GCAACTAGAG AAATGTAGCT ACAATAAAAT AGGTGGCATT CATATTTGTT TGTTGGCCAT ACCTGGGACT 001840
001841 TTTTAAGAAC CTGTTTTTGG TTAATCTTGT TTTTTTTTTT AAATTCTAAA CCCTTTTTTG TGTAATGTTG CAGCAGAAGC 001920
001921 GAGGGTCTCA GAAAACATCT CCTGTTCTGA TCTGGCACAG TTCCAATTAT ATGGATAACC TTCCATTTGT AAAGCTCTGA 002000
002001 AATAAGTGTC ACAAGGATAC GTAGATTTAA GATGCAGGTC CATCTAGAAG AAGTACAATC TGGTTGAAGG ATGGTGGGGC 002080
002081 AATACAACAA GTACATAACT CACTTTGTTG CAAGGCATAA TTGGTAAATC CTCATCTACT GGGACTACAG AAGTTTGACA 002160
002161 ACCCCTGTCT CTCGTGTCTT ATGGCCACCA ATGACTGCAG TCTTTCATTG TGAATTTGGG TTTCGTCTCA GAAATCTTCT 002240
002241 CAACATGATG CTCTGTCAAG CCAACAATGT TTGAGCAGTC AGCCATTTGT TTAATATCTC TGGATTATTG CATTGGTAAT 002320
002321 TCTTGCTGAA AACACTCAAG TCACCTGGGA GAACTGATCT GTTTATTAAT AGCTTTTAGG ATTTCAACAT TTCATATTTA 002400
002401 AACAGAGAAA TCTAACATTA CTTGACAGAA AACAGGAGTG GTCATAGGAA TGAAAAATTC ACATATCTTT GGGAACCAAG 002480
002481 TTATTATTAT CAATGAGTGT CATGGACTGG ATAAGAAAAC AAGGACTGGT TGGACCAGAA TTATAGCAGG ATACAGACAC 002560
002561 AAAGGCATTT AAATTTTAAA ATTCTAAGAA TGAAATATAA CTATAGTAAA TACATCTTTG GACTACTTTT GGCTTATGGA 002640
002641 TCATGGTTTG CAAACCCTTG ATCTGTGACA TAGATGTTAA AGGTGGGGTA ATGAGGTTGT GTGTGCAGAT CTCCAAACAC 002720
002721 CAGAGCATCA TGGGCAGCAC TAACCTGCAT GGTGCCCTTA GGAGGGCTGT AAGCCAGAAG CAAGTTCTCC ATTCTGCCCT 002800
002801 AGTCAGGCGT GACTATACCA AGGCTTATAA CTGGAGATAC AAGCCAAGCC ATATACCTGG CAATTCAGCA AAGTTCAGAG 002880
002881 AAATATGGCA TGAATTCATA CAAATTAATC AAGTGCATAA CATTAAGAAA CTGCAATTTT GAGTTGTGCG TATGCTTATA 002960
002961 GTGGCCCATT TCTAAATTAA AAGGAAGACT ATTTCTGTT
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Predicted Small Protein

Name ENST00000446838.2_smProtein_2642:2941
Length 100
Molecular weight 11512.3969
Aromaticity 0.0808080808081
Instability index 40.0292929293
Isoelectric point 10.1603393555
Runs 11
Runs residual 0.0225787284611
Runs probability 0.040331775626
Amino acid sequence MVCKPLICDIDVKGGVMRLCVQISKHQSIMGSTNLHGALRRAVSQKQVLHSALVRRDYTK
AYNWRYKPSHIPGNSAKFREIWHEFIQINQVHNIKKLQF
Secondary structure LLLLLEEEEEELLLLEEEEEEEELLLLLEELLLHHHHHHHHHHHHHHHHHHHHHHHHHHH
HHLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLL
PRMN -
PiMo -