ENST00000447809.2
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000447809.2 |
Source |
Gencode19 |
Same with |
lnc-CSRNP3-4:2,NONHSAT075279 |
Classification |
antisense |
Length |
2305 nt |
Genomic location |
chr2+:166938041..167158294 |
Exon number |
12 |
Exons |
166938041..166938188,166949063..166949173,167027897..167028068,167056149..167056328,167104705..167104786,167105853..167105894,167108289..167108422,167133598..167133757,167151075..167151237,167152533..167152639,167155200..167155351,167157441..167158294 |
Genome context |
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Sequence |
000001 GTCTTAGTCC TCTGAATATT TTTTCTTTGT TCAGAACCTG AGAAAGATGA ATGAAATTTA GTGTTTCCCA TCCCCGAGAG 000080
000081 ACACCCAGCA TCCACAACTT CACACTCTGA TGCCATTGTG TATTTATGCA AGAAATACCA TAACTAAGAT GAGGTCTCGC 000160 000161 TATGTTGCCT AGGCTAGTCT TGAACTCCTG GCCTCAAGTG ATCCTTCTGC CTCAGCATCG GGAGTCACTG GGATTAAAGG 000240 000241 CATGAGCCAC CATGCTCAGG AACTTGACAT CATCAGACAG TAAATCAAGA GGTACTGACA ACTGAGACTG AGTGATGGTC 000320 000321 CCTGCCTAGG ATTTGGAATC TTTGCATGAA ATAGGGACTC TAGCCACCAG CGACAAAGAA GTCAGGGAGA CTGCGGTCTC 000400 000401 TAGGAAGCAC TTCCAGGAAA CAGGAATTCA GGCAAAGTTG GACATTCCAA AGATGGCGTA GATGAACATG ACCAGGAAGA 000480 000481 GCAGGAGGCC GATGTTAAAC AACGCAGGAA GGGACATCAT CAAAGCAAAG AGCAGCGTGC GGATCCCCTT TGCTCCTTTG 000560 000561 ACTAGACGTA GGATTCGGCC AATCCTGGCA AGACGGATCA CTCGGAACAG GGTAGCAGAG ATCTCTGGAG GTGAAACATT 000640 000641 GCTCTGAACT GGCATTGATT CTAGCCCAGC TCTTGTAGAC CAATTACCAA CTTCTCCATC TCCCTCCAGT GCCTGGAACT 000720 000721 GGACCTGGCA CACAGGCCTC TGGCTCATCG GAATTCATAG GTTCAGCCTC TGCTTCTTCT CCTTCTCCAG GCAAAGGGTT 000800 000801 ATCAACTGTG CTGCACTCTG AGGAGCTTGA CCGGTTTAAT CTCTAGAAAG GAATTCACCA CCCCACCAGC ACGCGGAACA 000880 000881 CAATCAGGAA GGAGTGGAAG AAGTCGTTCA TGTGCCACCG TGGGAGCGTA CAGTCATCAT TGATCTTGCA GACACATTCT 000960 000961 TTGTAGCTCT TACCAAAGAG CTGCATGCCG ACCACAGCAA AAATGAAGAC GATGATGGCC AACACTAAGC CTTTAGACTA 001040 001041 AAAAGAAAAC AAATATTACA TACCCTGAAT CTGTGCTGAA ACCACAAAGG AGAGCATCTT TGGATCCTTC CAAGTAATAA 001120 001121 AAATATTCTG TTGAAGAAGA ATTTGAACAG TTATAACATC ACAGACTTTA ATCTGTGATT GTGATAAAGG AGGTCAAATT 001200 001201 AAAAAATCTG ATTATTGGGA GACTTTTGGA GTAATCATGG AAGAAAGACT ATGAAATCAG ATATTCTTGG ATTTGAATGT 001280 001281 TGCTTCTATC CCTTCTTAAC TTAAATCCAT GGGCATTCAT TATCATCAGT GCCTAACCTG GCAGAACCAC AGTCTACACA 001360 001361 TAATCTGGCA TCTGTCTTTT CCATGCTGGC TACCAAATGG CTGAATGTTG GTGGAGAAAC TCTCACAACC AAGTGAATGG 001440 001441 TTATATTTTA ATTTCGCTCT TGTTGCCCAG GCTGGAGTGC AATGGCACGA TCTCGGCTCA CCGCAACCTC TGCCTCCCGA 001520 001521 GTTCAAGCGA TTCTCCTGCC TCAGCCTCCT GAGTAGCTGG AATTACAGGC GCCCACCACC ATGCCCGGCT AATTTTTTGT 001600 001601 ATTTTTAGTA GAGACGGGGT TTCTTTTTTT TTCTTCTTTT TTTGTATTAT TTTTTAGCAA AAAAAAAAAA AAATACATGA 001680 001681 AGCAATTCCA GAAAGCGATG AATTAAATTA AATTTGATTA AAGGCTGTCT GTGTACATAG AGAATTGCAA TCTAACTTCA 001760 001761 TATGTAAACA AATTGCATTC TAATCTATTA GTATATTCTT GTAACAAGTA GCTGTCTCAG CCAATCACAG CAGCTGAGCT 001840 001841 TCAGCCAACC ACAGCCTGCT GATTTATCAG ACAATGTCCA CATAAGGCAA ATGTCAAGCT ATAAGCAATC AAGCTGTTTT 001920 001921 TGTGCGTCAC TCCCTTTTTC TGTCTATAAA TACTCCTGCT CATGTTGCTG AGTTGAGCTC TCCGAACTTC TCTTGGTTCT 002000 002001 GAGTGCTGCC TAAATCATTA TTATTATTAT CTTATTTCAG CAATAAATAC TATTTCATTG CTGAAATAAG CTGCTAAATT 002080 002081 TAATTTGTTG AAAATTTTTC TTTTAACAAA GGTTAAGAAA ACCATTCACA GTATAAACTC AGAAATAGGA GCAAGACTCA 002160 002161 GAATAAAAGG ACAGATCCCA GTGAGAAAAC TTAAGTTTAA ATAAGTGTGG TAAAATAATC TACAATATTA AATGTAAGTT 002240 002241 ACTCATCAGA TATATTAATT TTACAGCATA TAAATTAAGA AATAAAATTC TCCATCCATT GGAAA |
Predicted Small Protein
Name | ENST00000447809.2_smProtein_461:646 |
Length | 62 |
Molecular weight | 7027.3161 |
Aromaticity | 0.016393442623 |
Instability index | 71.893442623 |
Isoelectric point | 12.354309082 |
Runs | 11 |
Runs residual | 0.0275108347466 |
Runs probability | 0.0300139711904 |
Amino acid sequence | MNMTRKSRRPMLNNAGRDIIKAKSSVRIPFAPLTRRRIRPILARRITRNRVAEISGGETL L |
Secondary structure | LLLLLLLLLLHHHHLLHHHHHHLLLLLLLLLLLLLLLLLHHHHHHHHHLLEEEELLLEEL L |
PRMN | - |
PiMo | - |