ENST00000448901.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000448901.1

Source

Gencode19

Same with

lnc-CMPK2-8:1

Classification

intergenic

Length

4209 nt

Genomic location

chr2-:6506142..6515554

Exon number

3

Exons

6506142..6506296,6510978..6511124,6511648..6515554

Genome context

Sequence
000001 AGTATTCTGT AAGGACATTT GTGTTTATAT ATATCTGTCA TATGTATATA TATATCATAT ATATATCAGT CATATATATA 000080
000081 TCTCACACAT ATATGTAAGT GATTTTATGC TATGTATCTT TTTTTCTTCT GATATCTTTT TCTGGTTTCA ATGTTAGTTT 000160
000161 AATGCTAGCT TCATCAAATA AGTTGGGAAG TGGTCTTTTA CTCATATTTT GAAAGAATTT GTGTAGAATT ACTATAAATT 000240
000241 GTTAAGGAGA ATTTTTGTAG AATTTGCTAG TGAATATATT TATGTTTTGA ATTTTCTTTT GTGGAAGGTT TTTACTACAA 000320
000321 ATTCCACTTA CTTAGTAGAA TTAAGATTAT TCAAGTTATC TAATTTTTTA CTGAGTAATT CTGGTCTCAT TATGTCTTTC 000400
000401 AAGGGAATTT TTTTCATTTT TTAATATCAT TTTATAGCTT TATATTAAAA GTTCTGAATA TGAGTGGCTC TCTGCCTGCT 000480
000481 CCCTTTCACC ACCTTAATAT CTTAAGTGAA TAATGCATTC TCATCAAGAG GGTTAAAACT AATCATCAGC TGATGGCAGT 000560
000561 TCACTTTTTG AATTACAAAA AACTTTCCCC CTCAGGCCAT TTATTTTACT CATAAGCAAC CTAACTATAT TATAGATTCT 000640
000641 AAAATATTAT CTCCAAAGCC CCTAGAAGAT GCATACATTT AGTCCAAAAG GTTTAATAAC TCCCCAAGCT GATATTTCCC 000720
000721 TTTCTCCTTT GATATTTCCA TAATTTGGAG TGCCCATTGT CTGTTTTATT TCATATTGGG ACAAGCTGAA CAGGGACTAA 000800
000801 GGTGAAGGCA GAGAGGCATT CAGGGCAAAT CGTTTAAGGA GGTACTACAA ATACAAGGTC AACACTTGCA GGAAACTAAG 000880
000881 AAAGAGTGTC TCCTTAAAAT TTGTGTCCTA GGTGTCTTAT CTAGTTCTGG CCTTTTTAAT GTGAATTCTT TTTTTTTTTT 000960
000961 TTTTTGAGAT GAAGTCTGGC TCTGTCACCC AGGCTAGAGT GCACTGGTGC GATCTCGCCT GACTGCAACC TCCACCTCCT 001040
001041 GGGTTCAAGG GATTCTCCTG CCTCAGCCTC CCAAGTAGCT GGGATTACAG GCATGCACCA CCACACCTGG CTAATTTTTG 001120
001121 TATTTTTAGT GGAGACAGGG TTTCACCATG TTGGCCAGGC TGGTCTTGAA CTCCTGACCT GAGGTGATCC ACCCACCTCG 001200
001201 GCCTCCCAAA GTGCTGTGAT TACAGGCATC AACCACTGCA CCCAGCTTGA ATTCTTTGTG TCCTCTAAAA ACTCAAAATT 001280
001281 ATTTTTTAGT ATTTTACCAG AAACATGGGA GGCATCAATT TAAAAGGAAT GCACAGAAGA CACTTCATCA CTACTTCCAA 001360
001361 CCAAGCAGTA ATGGGCTGGA GATCCTAGAT TAAGCTACTG GCAGATCTGG TGTCTGGCGA GGGCTCTGCT CCTGGTTTGC 001440
001441 AGATGGGTGT CCTCTCATTA TGCCCTCGCA TGGTTGAGAG AAAAATCATC GTTCTTCTGT TTCTTCTTAG AAGGGCACTA 001520
001521 ATTTTATTCA TGAGCTCCAT CCTCATGACC TAATCACAGC CTAAAGGCCT CACCTCCTAA TACTATTATA TTGGGGGTTT 001600
001601 AGATTGCAAC GTATGTATTT GGGGGGGTCG GCACAAACAT TCAGCTCATA ACATCTTGTG AATCACTTTT AATTGCAATG 001680
001681 TTGGAACATT GCTTTAAAAT GATGCAGGTC TTATTTCCAT ATATGCATTA GGCAGTTCTT GCATTGCTAT AAAGAAATAC 001760
001761 AGGAAACTGG GTAATTTATA AATAAAAGAG GTTTAATTGG CTCACAGTTC TGTAGGCTTT ACAGGAAGCA TGGTGGTGCT 001840
001841 CAGATCTGCT TGGCATCTAG GGAGGCCTCA GGAAGCTTCC ATTCATGGCA GAAGGTGAAG ACAGAGTAGG TATGTCGTGT 001920
001921 AGTAAAAGCA GGAATACGCA AGAGACAGAG TGGGGGGCGG TGCCAAACAC TTTTAAATGA CCACATCTCA TATGAATTCA 002000
002001 GGGCAAGAGC TCACTTAATC ACCAAGGGGT TGGCCCAAAC CATTCATGAG GGATCTGCCC CCATTATCCA AATCCCTCTG 002080
002081 CCAGTCTCCA ACATTAGGAG TTACACTTCA ACACGAGATT TGAGTGGGGA CAAATATCCA AACTATATTA AGAAGAAACG 002160
002161 CAGCAGTTCC CAATTTTGTC TCTCATCACC CTCCCACACA CCAAATCATA TATGTGAGGA GTACTTTTAT ATGCACAACT 002240
002241 TGCCCTATTT AGAACTGTTC TGGAATGAGT GCATTTCCCA TAGTACTATC TAAAATTCCA TCCCCTGCAG TTCCCTTCAA 002320
002321 GAAACCACAT GACAGTATCA ATAATGCATT GCATTTTAGG AATAAAGTTA AATATTTTCT AATTTATTTT AACCATTAAT 002400
002401 AAACTGTTCT TAACTCTTTT TATAACAATA ATTTTTAGAT CAGTTCACAA GTGATTACAA CACACACGGC AGCAAGATGG 002480
002481 ATAATTGCTG TCCTAATGCA TACATTACAC TAAACATTAT TACATACAAT GATATTGCCA AGGATTTAAA ATTTTGATCA 002560
002561 GCAGTTTCAG GAAGCTAGGA GCTTTTAACT AAATGGATGA ATCATGGAGA AGAGTCCCGC CATTTCTCGT TCAAGATTGG 002640
002641 TGACTCAGTG TCAGTGGGAC ATGAGACTTC TATGATCTGA CCTTAGAATG ACCCCTTTTT ATGGTGGAAC AAGGTTTTAA 002720
002721 GCAAGGCCAT TCCCCTGGAG CCATAAAGGA TTGACTAGGG AAGATTGCAC TGAGCTTTGC TATGAACAGG GCTGCTGCAT 002800
002801 TTTTGTGATT TTTCCCCAGT CTGTGGTTTT TCCTGAGCCT GTATCCAGAC AGTGGTCATT CCAAGTCCAG CTTTGCTGTC 002880
002881 TGTTACAGCT TCTGTTTGAC TATGTCTTTA TACTCTTGCC TTATTAAGTT ATAAAACTGT TTATTGCTTT ATTGTCTCAG 002960
002961 CTCAAAGGTG AATAACAAAA CCCCAAGCAT ATGTCAGCCT TGGAAATTTA GTATTGACCT TCCTGGGCCC TCAGTGCCTG 003040
003041 CTCATTTCCT ATACCTAGCA TTTACGTTTC CAATGCTTCA TCTACACCTT CATTCACTAC TACCTATATG TCATTTGCCT 003120
003121 TATTATCTAT GGTACGTATA CTGAGTTCTA GTAAAATAGT ATTTCAAGTG CAAGTTTACA CATTCCTTAT ATTAACTTTA 003200
003201 ATTCAATACT TGCCATTTCT TTTTTGCTTC AGAACCAGGA GTTGAAAATA TTTCCATTTG TCTTTTAAAG AGGTTATAAA 003280
003281 ATTGTCACAA GGACATGGGA CATGCTGGCT ATTTTTCCCT TTTTACTATT TTATAGCATC CAATTAGGTG GATAATAAAA 003360
003361 TTCTTATTTT TCCAATGAGT AGTCCAAGAC TTCACGAATA AAAGTACCAT GCTTAATGTC ACACTACTAA CAAGCGGCAG 003440
003441 GACCAGTGTT TAAATGTAAA TATATCTTAT TTCAAAATTT GTTTGTTTTA CCAAATTTTG TAGCTCCTTC CAAGACTCCC 003520
003521 AACCTTCACC TTTTCTTTCT ATCCCTAAGA ATACATATGA TTTTCACATA CGAAGTTCGT TTATAACCTT TTGCTAATTA 003600
003601 ATTAGTGAAA AAAGATGCAA TGAATTTTGC AAAATGTCAT GCAAAAAATG AAGCAGGAAC AGACAATTAG GAAATATTAA 003680
003681 ACCATGGTTA GTAGCATTGC ATATCAGCAT TGGTTTGATT GTAATTTCAT TGTTCTGGAC TCTCGCTTGT TTAGTTGGTG 003760
003761 TCCCTGAGGC CTGCAGTCCT TCCAGGTGCT GAGAGTGGAG CTTCCCAGGC CTTCATCCTC TCCAGGACCT CAACCTTCCT 003840
003841 CGTTCCATGT ACAGACATAG AGCCCTTTCC ACTTCCTTTT TGTAAGAAAT AGTATTCTTT CCCACAGATG TCCAGCTCAC 003920
003921 ACCAGCCTGC TGCTTGCCTT TCACTGACCC CTTCGATGGA TGCTACGGAC TTGGATCCAC TGCCAAGGAA ACACGTCACA 004000
004001 GAGCAGTGTG TGGTTGGCAT ACTAAGCTCC ACCAAGAAAG AAGACATCAC CCAGAGTCAT GCTGTATTAT CCAGAATACT 004080
004081 TATGTGTCTC CATACCAGAG ATTGACCACC CAAACTTCTT CATTTATAAA AAGCTTCTCC AAGTACTTGA TTGCTTGAAA 004160
004161 TTGGACTATA GTAGCTTCAA GAAACACTTA TAAACATTAG CCAATTACA
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Predicted Small Protein

Name ENST00000448901.1_smProtein_3107:3244
Length 46
Molecular weight 5322.4402
Aromaticity 0.177777777778
Instability index 45.3666666667
Isoelectric point 10.2949829102
Runs 8
Runs residual 0.0155303030303
Runs probability 0.0501346935171
Amino acid sequence MSFALLSMVRILSSSKIVFQVQVYTFLILTLIQYLPFLFCFRTRS
Secondary structure LLHHHHHHHHHHLLLLEEEEEHHHHHHHHHHHHHLLLLEEEEELL
PRMN LLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLL
PiMo oooooooooooooooooTTTTTTTTTTTTTTTTTTTTiiiiiiii