ENST00000448901.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000448901.1 |
Source |
Gencode19 |
Same with |
lnc-CMPK2-8:1 |
Classification |
intergenic |
Length |
4209 nt |
Genomic location |
chr2-:6506142..6515554 |
Exon number |
3 |
Exons |
6506142..6506296,6510978..6511124,6511648..6515554 |
Genome context |
|
Sequence |
000001 AGTATTCTGT AAGGACATTT GTGTTTATAT ATATCTGTCA TATGTATATA TATATCATAT ATATATCAGT CATATATATA 000080
000081 TCTCACACAT ATATGTAAGT GATTTTATGC TATGTATCTT TTTTTCTTCT GATATCTTTT TCTGGTTTCA ATGTTAGTTT 000160 000161 AATGCTAGCT TCATCAAATA AGTTGGGAAG TGGTCTTTTA CTCATATTTT GAAAGAATTT GTGTAGAATT ACTATAAATT 000240 000241 GTTAAGGAGA ATTTTTGTAG AATTTGCTAG TGAATATATT TATGTTTTGA ATTTTCTTTT GTGGAAGGTT TTTACTACAA 000320 000321 ATTCCACTTA CTTAGTAGAA TTAAGATTAT TCAAGTTATC TAATTTTTTA CTGAGTAATT CTGGTCTCAT TATGTCTTTC 000400 000401 AAGGGAATTT TTTTCATTTT TTAATATCAT TTTATAGCTT TATATTAAAA GTTCTGAATA TGAGTGGCTC TCTGCCTGCT 000480 000481 CCCTTTCACC ACCTTAATAT CTTAAGTGAA TAATGCATTC TCATCAAGAG GGTTAAAACT AATCATCAGC TGATGGCAGT 000560 000561 TCACTTTTTG AATTACAAAA AACTTTCCCC CTCAGGCCAT TTATTTTACT CATAAGCAAC CTAACTATAT TATAGATTCT 000640 000641 AAAATATTAT CTCCAAAGCC CCTAGAAGAT GCATACATTT AGTCCAAAAG GTTTAATAAC TCCCCAAGCT GATATTTCCC 000720 000721 TTTCTCCTTT GATATTTCCA TAATTTGGAG TGCCCATTGT CTGTTTTATT TCATATTGGG ACAAGCTGAA CAGGGACTAA 000800 000801 GGTGAAGGCA GAGAGGCATT CAGGGCAAAT CGTTTAAGGA GGTACTACAA ATACAAGGTC AACACTTGCA GGAAACTAAG 000880 000881 AAAGAGTGTC TCCTTAAAAT TTGTGTCCTA GGTGTCTTAT CTAGTTCTGG CCTTTTTAAT GTGAATTCTT TTTTTTTTTT 000960 000961 TTTTTGAGAT GAAGTCTGGC TCTGTCACCC AGGCTAGAGT GCACTGGTGC GATCTCGCCT GACTGCAACC TCCACCTCCT 001040 001041 GGGTTCAAGG GATTCTCCTG CCTCAGCCTC CCAAGTAGCT GGGATTACAG GCATGCACCA CCACACCTGG CTAATTTTTG 001120 001121 TATTTTTAGT GGAGACAGGG TTTCACCATG TTGGCCAGGC TGGTCTTGAA CTCCTGACCT GAGGTGATCC ACCCACCTCG 001200 001201 GCCTCCCAAA GTGCTGTGAT TACAGGCATC AACCACTGCA CCCAGCTTGA ATTCTTTGTG TCCTCTAAAA ACTCAAAATT 001280 001281 ATTTTTTAGT ATTTTACCAG AAACATGGGA GGCATCAATT TAAAAGGAAT GCACAGAAGA CACTTCATCA CTACTTCCAA 001360 001361 CCAAGCAGTA ATGGGCTGGA GATCCTAGAT TAAGCTACTG GCAGATCTGG TGTCTGGCGA GGGCTCTGCT CCTGGTTTGC 001440 001441 AGATGGGTGT CCTCTCATTA TGCCCTCGCA TGGTTGAGAG AAAAATCATC GTTCTTCTGT TTCTTCTTAG AAGGGCACTA 001520 001521 ATTTTATTCA TGAGCTCCAT CCTCATGACC TAATCACAGC CTAAAGGCCT CACCTCCTAA TACTATTATA TTGGGGGTTT 001600 001601 AGATTGCAAC GTATGTATTT GGGGGGGTCG GCACAAACAT TCAGCTCATA ACATCTTGTG AATCACTTTT AATTGCAATG 001680 001681 TTGGAACATT GCTTTAAAAT GATGCAGGTC TTATTTCCAT ATATGCATTA GGCAGTTCTT GCATTGCTAT AAAGAAATAC 001760 001761 AGGAAACTGG GTAATTTATA AATAAAAGAG GTTTAATTGG CTCACAGTTC TGTAGGCTTT ACAGGAAGCA TGGTGGTGCT 001840 001841 CAGATCTGCT TGGCATCTAG GGAGGCCTCA GGAAGCTTCC ATTCATGGCA GAAGGTGAAG ACAGAGTAGG TATGTCGTGT 001920 001921 AGTAAAAGCA GGAATACGCA AGAGACAGAG TGGGGGGCGG TGCCAAACAC TTTTAAATGA CCACATCTCA TATGAATTCA 002000 002001 GGGCAAGAGC TCACTTAATC ACCAAGGGGT TGGCCCAAAC CATTCATGAG GGATCTGCCC CCATTATCCA AATCCCTCTG 002080 002081 CCAGTCTCCA ACATTAGGAG TTACACTTCA ACACGAGATT TGAGTGGGGA CAAATATCCA AACTATATTA AGAAGAAACG 002160 002161 CAGCAGTTCC CAATTTTGTC TCTCATCACC CTCCCACACA CCAAATCATA TATGTGAGGA GTACTTTTAT ATGCACAACT 002240 002241 TGCCCTATTT AGAACTGTTC TGGAATGAGT GCATTTCCCA TAGTACTATC TAAAATTCCA TCCCCTGCAG TTCCCTTCAA 002320 002321 GAAACCACAT GACAGTATCA ATAATGCATT GCATTTTAGG AATAAAGTTA AATATTTTCT AATTTATTTT AACCATTAAT 002400 002401 AAACTGTTCT TAACTCTTTT TATAACAATA ATTTTTAGAT CAGTTCACAA GTGATTACAA CACACACGGC AGCAAGATGG 002480 002481 ATAATTGCTG TCCTAATGCA TACATTACAC TAAACATTAT TACATACAAT GATATTGCCA AGGATTTAAA ATTTTGATCA 002560 002561 GCAGTTTCAG GAAGCTAGGA GCTTTTAACT AAATGGATGA ATCATGGAGA AGAGTCCCGC CATTTCTCGT TCAAGATTGG 002640 002641 TGACTCAGTG TCAGTGGGAC ATGAGACTTC TATGATCTGA CCTTAGAATG ACCCCTTTTT ATGGTGGAAC AAGGTTTTAA 002720 002721 GCAAGGCCAT TCCCCTGGAG CCATAAAGGA TTGACTAGGG AAGATTGCAC TGAGCTTTGC TATGAACAGG GCTGCTGCAT 002800 002801 TTTTGTGATT TTTCCCCAGT CTGTGGTTTT TCCTGAGCCT GTATCCAGAC AGTGGTCATT CCAAGTCCAG CTTTGCTGTC 002880 002881 TGTTACAGCT TCTGTTTGAC TATGTCTTTA TACTCTTGCC TTATTAAGTT ATAAAACTGT TTATTGCTTT ATTGTCTCAG 002960 002961 CTCAAAGGTG AATAACAAAA CCCCAAGCAT ATGTCAGCCT TGGAAATTTA GTATTGACCT TCCTGGGCCC TCAGTGCCTG 003040 003041 CTCATTTCCT ATACCTAGCA TTTACGTTTC CAATGCTTCA TCTACACCTT CATTCACTAC TACCTATATG TCATTTGCCT 003120 003121 TATTATCTAT GGTACGTATA CTGAGTTCTA GTAAAATAGT ATTTCAAGTG CAAGTTTACA CATTCCTTAT ATTAACTTTA 003200 003201 ATTCAATACT TGCCATTTCT TTTTTGCTTC AGAACCAGGA GTTGAAAATA TTTCCATTTG TCTTTTAAAG AGGTTATAAA 003280 003281 ATTGTCACAA GGACATGGGA CATGCTGGCT ATTTTTCCCT TTTTACTATT TTATAGCATC CAATTAGGTG GATAATAAAA 003360 003361 TTCTTATTTT TCCAATGAGT AGTCCAAGAC TTCACGAATA AAAGTACCAT GCTTAATGTC ACACTACTAA CAAGCGGCAG 003440 003441 GACCAGTGTT TAAATGTAAA TATATCTTAT TTCAAAATTT GTTTGTTTTA CCAAATTTTG TAGCTCCTTC CAAGACTCCC 003520 003521 AACCTTCACC TTTTCTTTCT ATCCCTAAGA ATACATATGA TTTTCACATA CGAAGTTCGT TTATAACCTT TTGCTAATTA 003600 003601 ATTAGTGAAA AAAGATGCAA TGAATTTTGC AAAATGTCAT GCAAAAAATG AAGCAGGAAC AGACAATTAG GAAATATTAA 003680 003681 ACCATGGTTA GTAGCATTGC ATATCAGCAT TGGTTTGATT GTAATTTCAT TGTTCTGGAC TCTCGCTTGT TTAGTTGGTG 003760 003761 TCCCTGAGGC CTGCAGTCCT TCCAGGTGCT GAGAGTGGAG CTTCCCAGGC CTTCATCCTC TCCAGGACCT CAACCTTCCT 003840 003841 CGTTCCATGT ACAGACATAG AGCCCTTTCC ACTTCCTTTT TGTAAGAAAT AGTATTCTTT CCCACAGATG TCCAGCTCAC 003920 003921 ACCAGCCTGC TGCTTGCCTT TCACTGACCC CTTCGATGGA TGCTACGGAC TTGGATCCAC TGCCAAGGAA ACACGTCACA 004000 004001 GAGCAGTGTG TGGTTGGCAT ACTAAGCTCC ACCAAGAAAG AAGACATCAC CCAGAGTCAT GCTGTATTAT CCAGAATACT 004080 004081 TATGTGTCTC CATACCAGAG ATTGACCACC CAAACTTCTT CATTTATAAA AAGCTTCTCC AAGTACTTGA TTGCTTGAAA 004160 004161 TTGGACTATA GTAGCTTCAA GAAACACTTA TAAACATTAG CCAATTACA |
Predicted Small Protein
Name | ENST00000448901.1_smProtein_3107:3244 |
Length | 46 |
Molecular weight | 5322.4402 |
Aromaticity | 0.177777777778 |
Instability index | 45.3666666667 |
Isoelectric point | 10.2949829102 |
Runs | 8 |
Runs residual | 0.0155303030303 |
Runs probability | 0.0501346935171 |
Amino acid sequence | MSFALLSMVRILSSSKIVFQVQVYTFLILTLIQYLPFLFCFRTRS |
Secondary structure | LLHHHHHHHHHHLLLLEEEEEHHHHHHHHHHHHHLLLLEEEEELL |
PRMN | LLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLL |
PiMo | oooooooooooooooooTTTTTTTTTTTTTTTTTTTTiiiiiiii |