ENST00000457464.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000457464.1

Source

Gencode19

Same with

lnc-XRN2-2:8

Classification

sense

Length

3855 nt

Genomic location

chr20+:21126227..21227260

Exon number

8

Exons

21126227..21126295,21142512..21143148,21143491..21143800,21186130..21186222,21195173..21195338,21209649..21209753,21213372..21213468,21224883..21227260

Genome context

Sequence
000001 AAGAAGATGC TATGCTCAAA AGATAGCCTG GGACTAAAAG AGGAACTGAC AGATGAAGAC AGAGAAAAGG TTGCAGTGCA 000080
000081 CGAGGGGATT AACTCAGGAA CAGCCATGTC AAGAGGATTG TATCAACCAG CAACAATCTT TATGGGCCGC CAAATGTCAG 000160
000161 CCATCTTAAG CATGAGAGAT TTCAGTACAG AGCACAAATC TCCCCAGCCC ACAAAGAACT TTTCAATTCC TGACCCACAT 000240
000241 TCACACCGAC AGACAGCCCA GAGCAGTAAT GTGACAGACA GCTGTGTAGT ACAAACTAGT AATGACACAC AGTGCTTAAA 000320
000321 TAAGTCTGAC AACATAGATG GAAAGGCATC TCTTCAGATT GGTGAGAAAA TGCCAGTCAC AGCCAGTGTA TTGTCTGAGG 000400
000401 AGGAACAAAC TCATTGCTTG GAGATAGGAA GTAACACACG TCATGGCAAG AGTAATTTAT CTGAAGGCAA AAAGTCTGCT 000480
000481 GAACTCAATT CCCCGTTACG GGAAAGATTA AGTCCAGAGA ACAGAACCAC TGATTTAAAG TGTGACAGTT CCAGCGGATC 000560
000561 AGAGGGAGAA ATACTGACAC GGGAACATAT TGAAGTTGAG GAAAAAAGAG CCAGCCCGCC AGTCTCTCCG ATACCAGTTT 000640
000641 CAGAATACTG TGAATCTGAA AATAAGTGGT CTCAAGAGAA GCATTCTCCT TGGGAAGGTG TTTCAGATCA TCTTGCTCAC 000720
000721 AGGGAACCAA AGTCACAAAA GCCCTTCAGA AAAATGCAGG AAGAGGAGGA GGAAAGTTGG AGCACCAGCA GTGACCTTAC 000800
000801 CATTTCAATA AGTGAAGATG ATCTGATTTT AGAGAGCCCA GAACCACAGC CAAATCCAGG TGGCAAGATG GAGGGAGAAG 000880
000881 ATGGAATAGA GGCCTTAAAA TTAATCCATG CTGAGCAAGA AAGAGTTGCC CTATCCACTG AAAAAAATTG TATTTTGCAA 000960
000961 ACCCTAAGCT CTCCTGATTC AGAAAAGGAA TCCTCCACTA ACGCACCAAC AAGAGAACCT GGACAAACAC CAGACTCAGA 001040
001041 CGTACCGAGG CACAGGTGGG TCAGCATGTT GCCACCTTGA AAGAACATGA TAATTCTGTC AAAGAAGAGG CAACAGCATT 001120
001121 ATTGAGAAAA GCCCTTACAG AAGAGTGTGG CCGTAGGTCA GCTATTCACA GTAGTGAATC ATCTTGCAGC TTGCCATCTA 001200
001201 TTCTGAATGA CAATAGTGGA ATAAAGGAAG CCAAACCTGC TGTATGGCTC AACAGTGTTC CTACAAGGGA ACAAGAAACA 001280
001281 GAAGCCTATC AGTTGCTGAA GAAGGCCACC CTTCAGGATA ATACAAATCA AACTGAAAAC AGGTTTCAAA AGACAGATGC 001360
001361 TTCTGTGTCA CACTTGTCAG GTTTGAATAT TGGCAGCGGT GCATTCGAGA CAAAGACAGC TAACAAAATT GCTTCGGAAG 001440
001441 CTAGTTTTTC ATCTAGTGAA GGAAGTCCTT TGTCAAGGCA TGAAAACAAA AAGAAACCCG TGATCAATTT AAAATCTAAT 001520
001521 GGTGAGAGAG ATAATCGGAC ACTAGATTTT CTTTTTCTGT TTTAACCAAA AAACTCTGTG ACATGCATTT GTTGTTTGCA 001600
001601 CCCTCATGTG AGTCCTGAAG CGGGCATGCT CACAGGGACT GCCATTGCAG CTGTCCCTGG GGTGGAACCT GAGGGCTTCT 001680
001681 GGAGGCTCAG TTCTTCACAG ACAGGACCAC ACGGGTGCCA TGGACCACAG GGGCAGAGCA TTGTAATTTG CAAGTATGAA 001760
001761 TTTGCAGGGG ATCCTGGCCT CCATGTCTAA TTAATTATCA GCACCCTGTA TTTTACCAAT GAAATGTTTC TTGCCTCTCT 001840
001841 CCTCATCCTC AGAAGCACCC ATTGCTCATG ACCGGACAGG CTCTTGGAGT AACTCTAACT GGTTTCCTCA TACCCAGTTC 001920
001921 CTCCCAGCTC CTGGGAACTC CCAGCTCCTC CACCTGGCCA CCAGCCTCCA AACCCTGGCT TCCCCCGACC TTCCTGTGTA 002000
002001 AGGACGGCCA ATGCCTCCCC GTACCTTCAG GGTAGAGTCT GAGCTTTCTC CATTCCTGGG AGGCCCCAGC CCTGCTCTCC 002080
002081 AGCTTATTCC TCCCAAGGTC GCCTCTTTGG GTCAAGCCAC AGTCAGCTTT TTTCAGCTGT AGCACACCTA TGCCTCTGTA 002160
002161 CCTTTGCCCA TGTTGTTCCT TCTGTAGGGA GTTCCTTTTC CTTTTCCTCA GCCCAGTGAG CTCCTATTCA TCCTTCAACA 002240
002241 CCCAACTCAC GGGAAAAATC TAGCCCTCCT ACCATAACAC TGTGGCATAT CCCCTGCCCA GCTTGGGCTC TCTCACCTCC 002320
002321 TGTCTCCTTA AACCCCTTAT ACCTTAAATT AAAGGTATAA TTTGATTAAT AGTTTTACTG ACAATAACAA AAATATTCGC 002400
002401 TGTTTATTTA GCCCCAGTAT GTCCCACTTT GCTAACCCAG TATGGAAACT GATTCAGAGC TGCTGTAGAA CCTAGGCCTA 002480
002481 GGAATCTGCC TTTTTAGCAA GCACCCCACT GTGAATCACT CTTCTAGAAG GACAGCTACC TACTGTGGGG GAGACAAGTA 002560
002561 CCCAGTGGGT TGTGATGGAG AGTATGGGCT TGAGTCAGAT GACTTGGATG GGACTCCCAG CTTGGCCACT CACTGGCATT 002640
002641 GTGATTGTGG CCAATTTCTT AACCCCCTTC AGCGTCCGTT TGTTTGCACA GTGAAATGGA AACATTAATA CTTACCTTGC 002720
002721 CAGGCTGGTG CGAGGATGAG ATGGGGTTGT GTATGAGAAG TCAGCACAGA GCTGGCAGGT GGTGCCATGC AGGTGTCAGC 002800
002801 AGAGTTAAGG GATTGTTGAT GTAGTAGACG TGGTCCGCTC CACTACACCT TGCCAGACCA CCTGCAGGGC ACCTCAGCTC 002880
002881 CAATTCACAG ACGCGCCTAC AGCTTCCTGC ACCAAGCAGC TGTGTCTCTC TGCCTGAGGG CTTTCTCTGG CTGCAGGAGC 002960
002961 GTGCTCAGCC CTCACAAGGC AGCCCAAAGT ACCAGGGAGT TGATGCCCTG GGTTGAGAGC AACCCTCAAC CAACAGAGGC 003040
003041 AAGTTGGTGG ATCAGTAACC CCACTCCCTT GCTCTTCACT GGGACAATCT GGGGAGAGTT CTGCAGTCTC TCAGGGGGCC 003120
003121 CCAGCAGGCT GAGCCTTGCC TGTCCACTCA CTGCCAGGCA CCCACTCGTC ATCATACCCT TCATTGGCTT CCTGTCTTCC 003200
003201 TTGTGTCACT GTCCCCATGG TTCCTGGGAT CACCTCTCAA GTAAATGATG TGGACCAAAG TCCTGTCTCA GGGTAACCAT 003280
003281 CTCTGCTTAT TCCTCTGCCA CGTCTTTCCC TTCTCCTCTC TGCTCTCATA AAGAAGAATG GGAGATGAAA GTGGAGGGGC 003360
003361 AGCTGAGGTG GGGCGGCATC AGGCTGATAC AACACCCCAG GGAACCCTGC TTCCATGTAA CCCTGACCTT AAATCCCTAT 003440
003441 CCTATAATAA AGAGTTGGGC ACAACAGAAG GGAAAAGGAA GTATTCTGCA AATTGTTTTC CATAACAGTG CAGAGGACAC 003520
003521 ACTTTGCAAT GTGTAATTTG TGCAGTATGA CATGCATTTG GGTGTGTCTG GTCAGGTACA TCATGTGGTG TCCCTGTTAT 003600
003601 GCATTTTGCA GACTGACACT CTGCTTAACC AGTCCTTCCG TGCTGTGCTG TTTTGTAAGC TCTTAACCAG AATGCAAAAA 003680
003681 TGTTAAATAA CTGTCTGGTT TTATTTTCCA GCCCTCTGGG ATGAGTCTGA TGACAGTAAC TCAGAAATTG AGGCTGCTTT 003760
003761 ACGCCCCAGA AACCATAACA CCGATGATTC TGATGATTTT TATGACTAAC GTGCTGTGAC ATTGGTTTCA AATAAAGTCT 003840
003841 TTAAACAAAC TAAAA
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Predicted Small Protein

Name ENST00000457464.1_smProtein_3002:3247
Length 82
Molecular weight 8902.1589
Aromaticity 0.111111111111
Instability index 46.3938271605
Isoelectric point 6.37005615234
Runs 10
Runs residual 0.0187229171777
Runs probability 0.0539480657128
Amino acid sequence MPWVESNPQPTEASWWISNPTPLLFTGTIWGEFCSLSGGPSRLSLACPLTARHPLVIIPF
IGFLSSLCHCPHGSWDHLSSK
Secondary structure LLLLLLLLLLLLLLEEEELLLLLEEEELEEEEEEELLLLLLLLLLLLLLLLLLLEEEEEE
HHHHHLLLLLLLLLLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHH
HHHHHHLLLLLLLLLLLLLLL
PiMo ooooooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTT
TTTTTTiiiiiiiiiiiiiii