ENST00000458178.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000458178.1 |
Source |
Gencode19 |
Same with |
lnc-PPIL2-1:2 |
Classification |
antisense |
Length |
3647 nt |
Genomic location |
chr22+:22292665..22297799 |
Exon number |
2 |
Exons |
22292665..22293985,22295474..22297799 |
Genome context |
|
Sequence |
000001 GCAGAGCGGA GGAGCAGCAG CTGCCACCGG CCGGAAGCCT GCTGGCTCGG CCGAGAACAA TGGCCGCCTG TCACTGTGGA 000080
000081 CAGCTGTCTC CCAGGCTAAG GCAAGGCTGC GCTCCCAGGG AATGCGGGCA GGGAGCCAGG GCGGAGGGCA GAGGACGAGA 000160 000161 GCGAGGAGGA GAGCGCGGGC ACCCACTGAT GCTGGCGGCC TCGGGTATTC GCTTTCTCTC TCTTCTCCCA CCTTGTTCCT 000240 000241 TTTCCCCGGA TGCACGCATG CACTAGTAAT GCCGAATTTA GAACAACAGG GAAAGGAAAG GAAATGGCAA AGGAAGGGAA 000320 000321 AGGAAATGGC CGACAGGAAA TGGCAAGGAA GGGAAAATCC ACTGCAACTC TGCTGCCTGC TGGCCTGTCC AGGGACAACT 000400 000401 ATTCAGCTGG GTGGGACGTT GCTACCCCCT TGTGGCACCC CTGCTGCAGC CTGCGATTCT TACGCCCTGT ATTTCTGGTC 000480 000481 TAACATCAAC CAACACTTTG GCGAAATATA ATAAAATGAA ATTACTAGGA GAATGAAAGA AAGTCACATG AAATAAAAGC 000560 000561 CCTGCTTTTT AATGATTATA TCCTCTGTGA AATGGATCTG CAGCCCTCTC CATTTCTGGG TTCCCCTGGC CACACCATGC 000640 000641 TTATGGCTGT CCCAGGAGCA GGCTGACAGA CAAGCTTCCA CCAGCATCTA ACCATGGGGC TCATGGACAC CGTAGAGCGT 000720 000721 CTCCACCCAA CAGAATCCTG ACTTGGGGGC AGCTGAGGCA GGGGGCCCGA GCGTTGAGGG GACCACGCTG CTGCCCCGAG 000800 000801 ACCTGCTGGC ATGCCACCTG GCCAACCCTG ACTTCGCCTG CCCGGGCGCA TGTTAACTGA GTTACAACAC TGAGGGCACT 000880 000881 TGAACCTGGC TGCATGACCA GAGATCGATC ACCTGTGAGA TCCTCTGTGA AACGGGATAA GCATCTTTAA TTTCCTGGGC 000960 000961 TGTTCTGGAA CTTCAGTCAG ACAGGACACA GGAGGGTGTC TGCACCACCC ACCCCTGCCT CGTGGGCTGA CTGGGAACTA 001040 001041 TATGACCTGT GGAGGGCTGT GACCGCCACC CTCCACCTCA CTGGGGCCGC AAGCCTTCTC TGCTCCTTGA TTCTGCTGCC 001120 001121 GTTGTGAGCG AGGGCCCCAG CACCCTTAGG GACCCCAATC AATGGGCTTC CCACAATGTC GTCACCCTTT GTTGCCTGCT 001200 001201 AAGCAGCCCT GGGGCCACCT CAGAAGAAAC AGAACTCACA GGTCACAGGG GCCTTTTCCT CCTCGTCATC GTCCTCCTCC 001280 001281 TCTTCTTCTT CCTCCCTGGG CAACTTCCTG AATTCGGAAA GGTGGGGTTT TGCTATGTTG TCCAGGCTGG TCTTGAACTC 001360 001361 CTGCCCTCAA GTGATCCTCC CATCTCAGCC TCCCAAAGCC CTGGGATAAT GGCGTGAGCC GCCACACCTG GCCGCCTTTG 001440 001441 GTCTGTTTGA AGAGGGACAT GGCATGATCA GATGGGGCTT TTAGGCCTCT CTGACCCTGG TGTGGAGGGT GGGCTGGCAA 001520 001521 GAAGGGGACG ACTGTCTAAA GGAGAGAGTC TAAGACCTGG GCTGGGCAGG GCCATGGTGA CAAACAGGAG CAGACAGAGT 001600 001601 CGGGCAGTAT AAATGGAGGG GCAGGGACAG TGTTGAAGTT TCTATTCTGA GCAACTAGAA GGCTCGTGGT ACAGTTAATT 001680 001681 ACCCTGATGG GGATGGAAGA GTCAGGCAGG GGATGGGCAA TGGGCTCTGT TTCCACAGCG ACTTGTGTTC CACGGAGGTC 001760 001761 AAGAGGCCTG AGGGCCTGCA AGAACATGGT CTGGGCAGGA GATGGAGCTG CGGAATGAAT GAGGATAGGG GGCTGAGTCC 001840 001841 CACAGGGCCA GAGCATGGCT AGCAAAGTGG GGATGACTCC AGGAGTGGCC TTCTGGGTGC CACGAAGGAA ATGTTTTAAG 001920 001921 AAGTGAGATT GGGTCACTGC TTTCAATGTC ATAGAACAGA GCTGAGCAGT TGAGGAGGCG TAGTGGGTAG AAAGGGAGGT 002000 002001 CGCAGCAGGC TGAAAGCAAA CCGACAGGAG GGTTAGCGTC TTTTAGCAGG TAGGCAGGGC AGAAGAGAGC CACGGGGCAG 002080 002081 ATCAGGGAAA GAAACACTGA AGCCATCTGT GGCTGAGAAG GAGGGCAGTG GGGAGGAGTG TCTAAAATTC TGAGCCATCC 002160 002161 CTGGCTTTTC TGGGCAGAAG GGGTCGCTCC CTCAGTGGCC CTATGGCCTC TAACATGCAT TTTGACCCCT GGAATCTGCC 002240 002241 TTCTCACCCA GTGGGGGCCC TGGAAGCTGG ACAACACACA TTCACCCCTG TGTGCCTGTC CCTGAGAGTG GGGGTCAGGG 002320 002321 GAGCATGCCT GGGGTGGCGA GGTGATTCTG CACTGGGCCG ACACTCCCGG CTTTAACTGG AAGGCGAGGA CCTTCCAACA 002400 002401 GCACAGGCTG ACAGGTCTTG TTCCATGGGG GCTGGGCACC CAAGGTATCT ACTGATGGTC TGAGGAATCT ACCGGGATGG 002480 002481 ATTCCTGATT TTTTTTTTTT TTTTTCTGAG ACGGAGTTTC GCTCTAGTTG CCCAGGCTGG AGTGCAATGG CGTGATCTCA 002560 002561 GCTCACCACA ACCTCCACCT CTCGGGTTCA AGTGATTCTC CTGCCTCAGC CTCCTGAGTA GCTGGGATTA CAGGCATGAG 002640 002641 CCACCATGCT CAGCAGATTC GTGATTTTTA AAATGAAAGG GTGACTCATG GGAGAAGCCT CTGGAACTGC CTTTGAAAAA 002720 002721 CAACCAGCCA AGACATGAGA AATTAGTTCC TCTGCCATTT GGGGGTTTCC TGCCAACTGC TGGGTTTTCC TTTTGCACAG 002800 002801 CAGGGAGGAA GGACGCCTGT TTCCCTTGGT CCCGGTGAGG CCAGGCCTCA GCTTCCTGCC CACCCGCCAC TGCTGCTGGG 002880 002881 GCAGGGAGGC AGTTTCCGGC TGTGGGGACC CAGACAATGC CTGGCCAAGG GCCACCATCG TCCTCTTCCT GGACACAGCT 002960 002961 CCCGCCTCAT CCCAGGGTCT GGCCTGGGAC ACGCCCTAGA GGCCCTCAGC CCTGAGTCAC TGCACCATGC AGATCCACCC 003040 003041 TGATTCTGGT CCCTGCAGAG CAGGCTCCTA CACAAGGCAA GAAGATGCTC CAGGGACAAG CCAAGGTGTA TGCAAGGCCC 003120 003121 AGGTGCCTGA GAAACACGTC TCACCGACCT TGGGGCAGGG GCTGTTACAA GAGGCTTATA GTCTAGTGGC AGAGACAAAA 003200 003201 ACCACACTCA AATCATTAGT GTACGGTATG CACTGCTCAG GGACTCAAAT ATGTGACAGG AGGCTCCAAA CAAGAGCGGA 003280 003281 GACAAGGCGT AAATAGCCCC CTGTGGACTG GATGTTCTGA CTCCTGGATG GCCTCCAGAA GGATGCCTTT TACGGTCTGT 003360 003361 GAAAGAGCTC AGGGACCAAG ATGCTCAAAG CCCTTCATGC CCAAGAGCCC CTCCTCAGGC TGGGACACGG GAAGCAGAGC 003440 003441 TCGGAGGTGG AACTCGTGAC TGTGTATGGG CACATGTGAG TGCGTGTGTG TGGACAGCCA GGCTTAGTGT AGACAACGTG 003520 003521 TGAGGCTCAG ACCCCAAGTG CTGACTACAC CTATGCACAT CCACACCTGC GTGTGAAAGA AGATGCTAGA AAAGAACAAA 003600 003601 AATAACTTAA AAAATAAATC CAATAAGATG GCTGGAACAT ATAACAA |
Predicted Small Protein
Name | ENST00000458178.1_smProtein_3026:3295 |
Length | 90 |
Molecular weight | 9745.947 |
Aromaticity | 0.0337078651685 |
Instability index | 53.2505617978 |
Isoelectric point | 9.07025146484 |
Runs | 12 |
Runs residual | 0.00837188808107 |
Runs probability | 0.0319952305247 |
Amino acid sequence | MQIHPDSGPCRAGSYTRQEDAPGTSQGVCKAQVPEKHVSPTLGQGLLQEAYSLVAETKTT LKSLVYGMHCSGTQICDRRLQTRAETRRK |
Secondary structure | LEELLLLLLLLLLLLLLLLLLLLLLLLEEEEELLLLLLLLLLLHHHHHHHHHHHHHHHHH HHHEEEEEELLLLEEEELLLEEELLLLLL |
PRMN | - |
PiMo | - |