ENST00000470449.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000470449.1 |
Source |
Gencode19 |
Same with |
lnc-SEC22A-2:3 |
Classification |
overlapping(AS),antisense |
Length |
760 nt |
Genomic location |
chr3+:123304403..123349668 |
Exon number |
3 |
Exons |
123304403..123304648,123348341..123348528,123349343..123349668 |
Genome context |
|
Sequence |
000001 AGGTGCGCTT TGCTTCCTAA CCCGTTGCCG GGTTGGAGAT TCCACCTCCG AAGTTTTCTT TCTGACTTTT GATTTTACAT 000080
000081 TCCTAGTACA GTGGAGAAGC CCAGGCGGCC TAGAATCCAG TGTCGTCCGT GAGTGCTTGG CTGGTGTTCA AGTGCATCTT 000160 000161 CCAGCCTGAG ACCGCGTGGA CTCGCTCATC GTGAGGGCGA GAGGAGGATA AGCCCATTGG GCTGTCGGCT GAGAGTGAGG 000240 000241 TGCGGGATTG CTGATGAAAT CCTTGGCATC GTCGGAGATC TCATCGAATG CCTCGTCGTC GAAGTCCCAG GTGGCTGAGG 000320 000321 TAACGTTGGC CAAGGTTTCG TTATCGTTGT CTCCCATGAA GGGGGAAAGG CCACTGACTC TGGAGAGACA AGAGCAGGAC 000400 000401 AGCAGGTGTG GCTAGGAGAG GGCGCGACGA CCAGATGAGG GAATTGAGGC ACAGCCCAGG CTCAAGTCAC CTGCCCAAAG 000480 000481 ATTCACAGCC AGTGAGATTG GAAGCCAGGT ATCTGCCTCT AGAGCCTGTC CTCTTAAATG CTATACTATC CTAACATTTC 000560 000561 TGTAAAGATG AAGTAAATTG CAGTGTTCAG CACTGGCACC AGGCCTGGTC CACAGTAAGG AGGCGGTCCA TGCCCGGAGA 000640 000641 TCTCATGCAG TTCTGCTGGG TTCCCTCCAC TGCCTTACCA AGCTGTGAGT GCAGGAATGA CTTTGTGACC AGCAGCTTAA 000720 000721 GCCAAATAAA CTTTATAAGG TAAAGAATTT CAAAACAAAA |
Predicted Small Protein
Name | ENST00000470449.1_smProtein_434:553 |
Length | 40 |
Molecular weight | 4421.0894 |
Aromaticity | 0.025641025641 |
Instability index | 76.4051282051 |
Isoelectric point | 8.38250732422 |
Runs | 7 |
Runs residual | 0.0107466063348 |
Runs probability | 0.0305095010977 |
Amino acid sequence | MRELRHSPGSSHLPKDSQPVRLEARYLPLEPVLLNAILS |
Secondary structure | LLLLLLLLLLLLLLLLLLHHHHLLEELLLLHHHHHHHLL |
PRMN | - |
PiMo | - |