ENST00000472838.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000472838.1

Source

Gencode19

Same with

lnc-SPAM1-2:1

Classification

intergenic

Length

1754 nt

Genomic location

chr7+:123634676..123667713

Exon number

5

Exons

123634676..123634771,123634982..123635156,123639077..123639203,123653165..123653261,123666455..123667713

Genome context

Sequence
000001 AGAAATGCTG TAGCATAATA AAGGGAGCAG ATGAATGACT GAAGCCCTAC AGCTCCACTA AAGATTAGAG TAAAATCTGC 000080
000081 ACTTCAAAAG ATCCTGTATT CTTGCAAGAG AACAGAGCTC CTGATCACCT GTGTGCGTCC TTTGAGTGGA TGGCAGCTGC 000160
000161 ATCTCTGCAT TACAGCTAGT TAGAATGATG AGTCCTTGCT ATGCCTCAAG CACTGTTTCG AGTGTTTGAT GTCTATTATC 000240
000241 TCACTTCATC CTCACCAGGA CCCCATCCGA GGATTTGCGA CTTGAGTAGC ATTGACGGTG GTGATGGGGA GCCTGGCAAG 000320
000321 ACAGCAGATG TCTACAGCAA GAGGAGGGAA TGGGAAGCTG CTCTGATGGC GTAATCATCA AGGTTGCTGA TAAAATGGCC 000400
000401 TTAATTTCAG TTGACAGTAA CTATTGGATC CCCAGGAATA TGTTTGCATA TTTGGGGAGA AAATACTATT GGAGGGGAAC 000480
000481 AGAAATGCTA CTAAGGGTCT CACTGTGTCA CCCAGGCTGG AGTCCATCAA AGCTCACTGC AGCCTTAACC TTCTGTGCTC 000560
000561 AAGGGATCCT CCCACTTAAG CCTCCTGAGT AGCTGGAACT ACAGGCATAT GCCACCGAGC CTGGCTAATC TTTGATTTTT 000640
000641 TTGTACAGAT TGTGTCTCCT TATGTTGCTC AGGCTGGACT CAAACTTCTG GTCTCAAGCG ATCTTTCCAT CTTAGCTTCC 000720
000721 CAAATTGTTG GAATTATGGA CATGAGCCAG TGTGCTTGGC CTGATTTTTT TTTTTTTTTA ATGAGAAAAA CGTTCCTTAA 000800
000801 GAAAAGTTTC ATTGTAGTAA GTAATCAGGA TGAATAGCAT ATATTAGCTC CGAAAAACTT TGGAAGCCTT CTTACTTCAC 000880
000881 TGAAAGTGGG GTTTATCAAC TCAGCTGCCA ACGGCTTTCC TCCCATTTAG CCTTTGTGTG AAAAACACAA TTAATACTTT 000960
000961 CTTGAGTAGT ACAAGCTGAG CCGAGAAACC ATCTTTCAGA GGTGTAAATT CTTGCCTTGG GTGGAAGGCT GGATGTTATT 001040
001041 AACTTTCACA ATTTCTTTCA ACACTTGATT TTCCTCAATC ATGGTAAAGA CATATTATTT ATTTTTCTTT TTAGTTGGGA 001120
001121 AAGTTGATTC ACGTGACTTT TGCATTTTGT AGAATTTTTA AGAGGTAAGA TGAAAATTAA ACATTTGTGC GTGTTAAGGA 001200
001201 TCCATGTTTC TCTGTCAGAT GTCTGGTAAT TTGCTTGACG ATTTTTGCAA AGATAATTTA GAAATTAAGG AAACCATTCT 001280
001281 CTACGTTTTT CTTTACATTA AAAGAAAAAA GTCTCCAATA AAAAATTTCT CTATCCACAT TACAGGTTAA TTTACAATTT 001360
001361 CAGCTGCTGG TGGCTGGCTT GAGGCCTCAA TGTTAAAAAT GAGAATGAGG CTAATTCTAG TGAATAGAGG TCCACACAGA 001440
001441 CAATTGCTAT CTTTGTTAGA TGCTCCAGTA CCAAGCCTAA GAATAGGAAA AAAACTAAAA ACACCCTGGA AATGTAACAG 001520
001521 AATCATCTTT TGCTGCCATC TTTCTCTTCA GTATAAGCTG AGCATGTGTT TGATGCATAG CGGTGTGGGA ACTATATACT 001600
001601 TTCTTCTTAC TTTCCTTCAG TAAAGGAGCT TAGCTCCATT AAGCATTGTT CAAGATAGTG TATTTAAAAT TAACATAAAA 001680
001681 GGTAAAAGAT TTTAATGCCT TTTAATATAA GGAAAATTGA TTTTATTAAA ATGCTTTAAG ATACTACAAT ACAA
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Predicted Small Protein

Name ENST00000472838.1_smProtein_200:373
Length 58
Molecular weight 6289.9944
Aromaticity 0.105263157895
Instability index 58.5315789474
Isoelectric point 5.03790283203
Runs 7
Runs residual 0.0311403508772
Runs probability 0.0467105761223
Amino acid sequence MPQALFRVFDVYYLTSSSPGPHPRICDLSSIDGGDGEPGKTADVYSKRREWEAALMA
Secondary structure LLLEEEEEEEEEEEELLLLLLLLLEEELLLLLLLLLLLLLLLHHHHHHHHHHHHHLL
PRMN -
PiMo -