ENST00000472838.1
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
ENST00000472838.1 |
Source |
Gencode19 |
Same with |
lnc-SPAM1-2:1 |
Classification |
intergenic |
Length |
1754 nt |
Genomic location |
chr7+:123634676..123667713 |
Exon number |
5 |
Exons |
123634676..123634771,123634982..123635156,123639077..123639203,123653165..123653261,123666455..123667713 |
Genome context |
|
Sequence |
000001 AGAAATGCTG TAGCATAATA AAGGGAGCAG ATGAATGACT GAAGCCCTAC AGCTCCACTA AAGATTAGAG TAAAATCTGC 000080
000081 ACTTCAAAAG ATCCTGTATT CTTGCAAGAG AACAGAGCTC CTGATCACCT GTGTGCGTCC TTTGAGTGGA TGGCAGCTGC 000160 000161 ATCTCTGCAT TACAGCTAGT TAGAATGATG AGTCCTTGCT ATGCCTCAAG CACTGTTTCG AGTGTTTGAT GTCTATTATC 000240 000241 TCACTTCATC CTCACCAGGA CCCCATCCGA GGATTTGCGA CTTGAGTAGC ATTGACGGTG GTGATGGGGA GCCTGGCAAG 000320 000321 ACAGCAGATG TCTACAGCAA GAGGAGGGAA TGGGAAGCTG CTCTGATGGC GTAATCATCA AGGTTGCTGA TAAAATGGCC 000400 000401 TTAATTTCAG TTGACAGTAA CTATTGGATC CCCAGGAATA TGTTTGCATA TTTGGGGAGA AAATACTATT GGAGGGGAAC 000480 000481 AGAAATGCTA CTAAGGGTCT CACTGTGTCA CCCAGGCTGG AGTCCATCAA AGCTCACTGC AGCCTTAACC TTCTGTGCTC 000560 000561 AAGGGATCCT CCCACTTAAG CCTCCTGAGT AGCTGGAACT ACAGGCATAT GCCACCGAGC CTGGCTAATC TTTGATTTTT 000640 000641 TTGTACAGAT TGTGTCTCCT TATGTTGCTC AGGCTGGACT CAAACTTCTG GTCTCAAGCG ATCTTTCCAT CTTAGCTTCC 000720 000721 CAAATTGTTG GAATTATGGA CATGAGCCAG TGTGCTTGGC CTGATTTTTT TTTTTTTTTA ATGAGAAAAA CGTTCCTTAA 000800 000801 GAAAAGTTTC ATTGTAGTAA GTAATCAGGA TGAATAGCAT ATATTAGCTC CGAAAAACTT TGGAAGCCTT CTTACTTCAC 000880 000881 TGAAAGTGGG GTTTATCAAC TCAGCTGCCA ACGGCTTTCC TCCCATTTAG CCTTTGTGTG AAAAACACAA TTAATACTTT 000960 000961 CTTGAGTAGT ACAAGCTGAG CCGAGAAACC ATCTTTCAGA GGTGTAAATT CTTGCCTTGG GTGGAAGGCT GGATGTTATT 001040 001041 AACTTTCACA ATTTCTTTCA ACACTTGATT TTCCTCAATC ATGGTAAAGA CATATTATTT ATTTTTCTTT TTAGTTGGGA 001120 001121 AAGTTGATTC ACGTGACTTT TGCATTTTGT AGAATTTTTA AGAGGTAAGA TGAAAATTAA ACATTTGTGC GTGTTAAGGA 001200 001201 TCCATGTTTC TCTGTCAGAT GTCTGGTAAT TTGCTTGACG ATTTTTGCAA AGATAATTTA GAAATTAAGG AAACCATTCT 001280 001281 CTACGTTTTT CTTTACATTA AAAGAAAAAA GTCTCCAATA AAAAATTTCT CTATCCACAT TACAGGTTAA TTTACAATTT 001360 001361 CAGCTGCTGG TGGCTGGCTT GAGGCCTCAA TGTTAAAAAT GAGAATGAGG CTAATTCTAG TGAATAGAGG TCCACACAGA 001440 001441 CAATTGCTAT CTTTGTTAGA TGCTCCAGTA CCAAGCCTAA GAATAGGAAA AAAACTAAAA ACACCCTGGA AATGTAACAG 001520 001521 AATCATCTTT TGCTGCCATC TTTCTCTTCA GTATAAGCTG AGCATGTGTT TGATGCATAG CGGTGTGGGA ACTATATACT 001600 001601 TTCTTCTTAC TTTCCTTCAG TAAAGGAGCT TAGCTCCATT AAGCATTGTT CAAGATAGTG TATTTAAAAT TAACATAAAA 001680 001681 GGTAAAAGAT TTTAATGCCT TTTAATATAA GGAAAATTGA TTTTATTAAA ATGCTTTAAG ATACTACAAT ACAA |
Predicted Small Protein
Name | ENST00000472838.1_smProtein_200:373 |
Length | 58 |
Molecular weight | 6289.9944 |
Aromaticity | 0.105263157895 |
Instability index | 58.5315789474 |
Isoelectric point | 5.03790283203 |
Runs | 7 |
Runs residual | 0.0311403508772 |
Runs probability | 0.0467105761223 |
Amino acid sequence | MPQALFRVFDVYYLTSSSPGPHPRICDLSSIDGGDGEPGKTADVYSKRREWEAALMA |
Secondary structure | LLLEEEEEEEEEEEELLLLLLLLLEEELLLLLLLLLLLLLLLHHHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |