ENST00000473713.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000473713.1

Source

Gencode19

Same with

lnc-GPR27-3:1

Classification

intergenic

Length

2693 nt

Genomic location

chr3+:72200408..72223483

Exon number

3

Exons

72200408..72200569,72208512..72208618,72221060..72223483

Genome context

Sequence
000001 GTAGAAACCC AGTTGCACAG GGCTTTATGC CTGGCAAGGG CACCCCTTGC TGTGTGCATC CCAGAGGAGG CACGTCTGAA 000080
000081 GTCTGCAGAG GAAGCTTCTA TCTTCCCTTC CAACGAATTC CTGCTCAGGC CAGCAAGGAA GAGAGTTTGA GTTGTTTATG 000160
000161 GGACTCGTTT ATGGAACGCA CACGCTGTGC CAGGCATTGT GCACAGAGAG ACCCAGTTCC TGCCCTCTTG GAGTTTATAT 000240
000241 GACATGAGCT GAAGACAGAC AAGAAGCAAG TGTAAGAGCT ACCAGAGGGA GGAAAGTGGA AGCTACCAGA CGGAGGAAGC 000320
000321 ATAAACCAGG TCCTGATCCC TGATTAATTG AGAATCAGCC AGCTTGGGAA GGGGATGGCT GCGCAAGCCC ACAGAACGCA 000400
000401 GACTCCCAGA GGAGGCAGGG GTAGGAAAGC TCTTGGCCGT GGCCTGATTG TCTGGGAGAC GGGAGTCAAG ATGGCTTGGT 000480
000481 TTCAACAAAC TGGCTTTGAT TACTTGGCGT TTGGCTCTGT GCTCTCTGGC CAGGTCAGCC TGACCCACGG TTGTCACCCC 000560
000561 AGAGGACTGT GAAATAACAA GTGCAGTTAA CTGGCCACTG CTGATCTGCG CCTAGAAGAC AACGTCTCAG TTGTTAAGGC 000640
000641 TTTTGTTGGC CTGCTCAGGA AGCGATTCTT TTTGCCTGCA AATTATTGTA GGTTCCTGAG GGAACCGTGC CAGTCCTTGC 000720
000721 CCTTTAGCTG CTCTGCTCTG TGCTGGGCTT GTGGGGTGAG AGAGGAGACA GAATAGGGAG AAGGAGGAGA GGGGAGGCTG 000800
000801 TACCTTGTAG GTGGATATTT TAAGGCTCTA ATGTTAGCTG TGGTTGGAAT TGACCAAGGG AGGCACTAGC AAGAGGTTGG 000880
000881 AGGGCCGGAA GAGGAAAGAA ACCAGAGTTT CTCTCCAACT CCTCTCTCTC TTTCTCTGCC TCAGATGGTC AAAATTTTAA 000960
000961 GGAGACAGAA TCCAACAGGG CTGGGATTAG GATGAAGTGA GTGAGGCTGA GCTGTGCAAA TACGAGGTCA GATCCTGACC 001040
001041 TTGTTCATCA TGGAATTTTT GCATTAATGT TGATATTTTT TAAATATTGT GTTGAAATAT TTATCTTGAT TACTGAGCTT 001120
001121 TTTGACATTT CCTTAGACTT TATCCCAAAG CAAGAGCCTT GCTTGTTTCA CCCTGGTCCT GGCCTTGCCT TCCAGTGTGT 001200
001201 CGGACACATT TACGCACAGA GAAAAATAGG CAATCCAAAT GGTCCAACTC TATTGGATAT TCTCTATGCT GCTTTCATTC 001280
001281 ACTCAATAAT GTGTAGCTGA GCACTTTTCT GTGTCAATGA ATATAGTTCC ACATTATCCT GGGCTTGAAG GATGTGTTAT 001360
001361 CAAATATTTT ACTAACCCCC CACTGATGCA TCTAGCAGGA TCTGTCCATG CCCTGCCCAT ATCTCTAACA TTTCTATGTG 001440
001441 CTCCAGCCAA ACTCCACTGC CAGCTCTGCA TTTCTGAGTG GAAAGTCTCG TTTCAGATCT GCAGAATGCC ATGCTGCCTA 001520
001521 TCATTTCAGC AGGGGAAACT GCCATAGAAT TAACATCTGC CAGGAATAGC TCTTGACCAA TGACTAAGGG GGGACTGGTG 001600
001601 TGTAAATACC CCAGCTCCCT TGCCCATTGG GTGGGACAAC TCAGGTGTGT GCTGTACACT ATATCCCAGA GCTCTCTCCA 001680
001681 TGGGTACAAG CTCCAGTTGC CCACAGTAGT GCTTGGCTTA ATTACCTGCC TTGATTGGCT GCCTGTCCTT CTCCATATCA 001760
001761 CTTTTCCTTT CCCTCCTGGG GCTGTCTACA ACCCCAACCC AGTAACAACT GCACTTGAAT CTTTGTCTCA GGATCTGCTT 001840
001841 CCGTTAAGAT GGACATTCCG ATTATTTTGA ATTTTTCAGT GTTAACATGT TCACCACCCA TATGGATTTT GGCATATTAA 001920
001921 TAGCTGCCAC CCCCTCCTTT GGGGATGTGG TCCATACAAA GCAAGGGTAA CAGAAGAAGG TAAAGTAGAG AAAAGAGACA 002000
002001 GAAACTCTGA AATGCTACCA TGCATCTCAG AGTTATGTCC TATAAAATGA GCCTTTTCAG TATGTGCTGT GGCATCAAAA 002080
002081 GTGTTGAGAA GCATTGTTCT CACTGGTCAG GCTGTGCCTT CACCTCTGTA GCTCCAATGA GTGACACATA GTAGATAATG 002160
002161 GATAAATATG TGTTGCATGA ATAAAGGGAG GAGTAATTGG TTCATGCTCT GAGCCTCTGC CAAGCTGAGT ATATGAGACC 002240
002241 TTTTGATTTA CCTGAGCAAT TGAGCATCTG TGCCTCAGGA CTCTCTAGTT CTACCATCAA GACAGAGAAT GGTGTGATAC 002320
002321 TCAGGTTAAC AAGGTGAGTC CAGGAGTGTT GCCCTGGAGG CATAAAACAG GGGCCCAGCC TTTGGAGATA AAGCATGCTC 002400
002401 TGGTCCTAAA TGGCAGCAGG AGAAGAATCT TCCCAAAGTG AGAGTCAGGC CACAATACCT CCCCTGGGAG GACGTCTGTG 002480
002481 CCTGTGTATG TTGGAGAGAG AAGGAGCTTT TTCATCCCAA GTGAGTAGAG AGGTTACATC CTCTGACTGC TTCCCCCTCT 002560
002561 CTCTGTCTTT CTCTCTCTCC TGCTGTGAAG GCCAAGTATG ACTTCACAGA ATCCCTAAGC TCCATAAATC AGTTCTAGAT 002640
002641 CCATCCCTTG CAGCTGTAAT GAAAGCAGGA TTTTAATAAA AACTGGATAC TTC
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Predicted Small Protein

Name ENST00000473713.1_smProtein_1316:1546
Length 77
Molecular weight 8472.1579
Aromaticity 0.0921052631579
Instability index 46.7921052632
Isoelectric point 8.54974365234
Runs 16
Runs residual 0.0691167574108
Runs probability 0.0406233439322
Amino acid sequence MNIVPHYPGLEGCVIKYFTNPPLMHLAGSVHALPISLTFLCAPAKLHCQLCISEWKVSFQ
ICRMPCCLSFQQGKLP
Secondary structure LLEELLLLLLLLEEEEELLLLLHHHHLLLLLLLLLLHHHHLLLLHHHHHEEELEEEEEEE
EEELLEEELLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLL
LLLLLLLLLLLLLLLL
PiMo oooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiii
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