ENST00000478823.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000478823.1 |
Source |
Gencode19 |
Same with |
lnc-U2SURP-2:2,NONHSAT092508 |
Classification |
intergenic |
Length |
610 nt |
Genomic location |
chr3+:142683002..142683745 |
Exon number |
2 |
Exons |
142683002..142683172,142683307..142683745 |
Genome context |
|
Sequence |
000001 GTCCGGATCG GGGCCGTGTC ATTGTCAGCT ACCTGGGGAT GCGCCTCTCG CTCCCTCACT GTCTTTGCGT GTGTGTTAGT 000080
000081 GTGTGTGTGT GTGTGTGTGT GTGTGTGTCG GCCTGTCTAC GCACTACACG AAGGCTTAGT TGGTCTTCTT TCGTCTAGTG 000160 000161 GGCGCACTCA GGACTTCTAT TTGGAACTGA GTCCGACAGC TCAGGACTGG CTGCTCAAAC TCCACAATTT AATGAAAAAT 000240 000241 CTCAGATGAT GACTCAGAAA ACCTCTAATG ATCTGAGGAA TATATTAAGG GATTCCAGAG TCAAAGGCTG ATCATGGAGG 000320 000321 GCATTGATGA GGGAAGACTT CAGGTAGGAG GTGCATTCTA GCAGGAACTG AAGAGAATGA AGTCCAGTTG GTAGAAACGG 000400 000401 AGGGGGTGGC TTGGATAAAT CTTATATGTA ATTAATCAGA AGTACCTGGC AGGTGGCTGG AGACCAGAAG AAAGGAACAC 000480 000481 TGGAAGAATG AAAACGGTTG TGATGCACTG CAGTGTGAAA ATATGCCCTT GAGCCTTAAA GAAAGGGGCT TAAGGCCGGG 000560 000561 CGCGGTGGCT CACGCCTGTA CTCCCAGCAC ACAGATCACG AGGTCAAGAG |
Predicted Small Protein
Name | ENST00000478823.1_smProtein_38:157 |
Length | 40 |
Molecular weight | 4321.321 |
Aromaticity | 0.0512820512821 |
Instability index | 46.8564102564 |
Isoelectric point | 8.78167724609 |
Runs | 5 |
Runs residual | 0.0405354449472 |
Runs probability | 0.0485426603073 |
Amino acid sequence | MRLSLPHCLCVCVSVCVCVCVCVSACLRTTRRLSWSSFV |
Secondary structure | LLLLLLLEEEEEEEEEEEEEEEEEEELLLLLLLLHHHLL |
PRMN | LLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL |
PiMo | oooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiii |