ENST00000481027.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000481027.1

Source

Gencode19

Same with

lnc-TRPV2-1:24

Classification

intergenic

Length

1016 nt

Genomic location

chr17+:16342635..16345301

Exon number

5

Exons

16342635..16342728,16342842..16343017,16343499..16343567,16344388..16344444,16344682..16345301

Genome context

Sequence
000001 TGGTAGGGCC ACATCTGCCA GAGCCTGGAG TCTGCGAAGG CCGGGACCCG GTTCCCCGGC CCACAGTGGG GGTGTGCAAA 000080
000081 CCCGAGAGAA CTGGGAAGTG CCGTCAGAAG CGATAACTGA CGACGTCTAA TGTCTATCTG ACCGCAGTCG CTGAAACCTC 000160
000161 TACAACTTAG TTGACCGTAA CTGCCAGAGC CCTGCCCTGA ATTCCTGTCC TTACTCCCTC TTTAAGATTG CGTACCCACT 000240
000241 GCAGAGTGCT GAAGACGGGG TAGCCACGAG GTTGCAAATT CGTGAAGAAT CAGCATCATG TTTGGCAGCT GAGTATTGGA 000320
000321 GCCAGGAGCC TGCCATGAGG TTTTGAGAAC AGAGTGCTGT TTTAGAGCTG GCAGCAGCAT CTCAGCCCAA GAGAAGGTTA 000400
000401 TATTCCCAGA GGATGTCAGT CCCAAGGACC AGTAGCTGCC ATCAGTTTGG ATTCTGAAAA CTAACTGGCA TCAACACTGG 000480
000481 GTGTAGAAAC ATGCTTGCCT TATGTATCAG AGGACATGCT CAGCAGATCC AAGAGATATA TTTGGCAACT TTTTCTAGAA 000560
000561 AAGGCACATT GGGTATCATT CATTACATTC TTGAGTTTTT TTGGGTTTTT TTTTTTTTTT TTGAGACAGT CTTGCTGTAT 000640
000641 TGCCCAGGCT GGAGTGTGGT GGCACAATCA CAGCTCATTG CATCCTCAAT CACCCAGGCC TAAGCAATCC TCCCACCTTG 000720
000721 TAGCTGGGAC TACAGCTCAC AGCACACCTG GCTAAAATTT TTTTTTTGTT GAGACGGATT CTCTATGTTG CCCAGGCTGG 000800
000801 TCTCAGGCTC CTGGGCTCAG ATGGTCCTCC TGCCTCAGCT TCCAAAGGCA CAGGCCAAGT TGTAGCTTTG TCCCTTGCCA 000880
000881 TCATGCCCAA CAAGAGGTTC TATACCTTTT AATGAATTGA CTTTCATAAA TTGGTTATGT TGGTGGGCAA AGTTCTTTAA 000960
000961 GCTGGAAATT GTAAATTCCT CCTGAAATGT TTTTTCATGC AGTTACCATG AACTAA
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Predicted Small Protein

Name ENST00000481027.1_smProtein_515:754
Length 80
Molecular weight 9214.4964
Aromaticity 0.189873417722
Instability index 66.6151898734
Isoelectric point 10.4531860352
Runs 11
Runs residual 0.00104040228889
Runs probability 0.0156091920798
Amino acid sequence MLSRSKRYIWQLFLEKAHWVSFITFLSFFGFFFFFLRQSCCIAQAGVWWHNHSSLHPQSP
RPKQSSHLVAGTTAHSTPG
Secondary structure LLLHHHHHHHHHHHHHHLHHHHHHHHHHHHHHHHHHHHHHHHHHHLEEELLLLLLLLLLL
LLLLLLEEEELLEELLLLL
PRMN LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLL
LLLLLLLLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTooooooooooooooooo
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