ENST00000481898.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000481898.1 |
Source |
Gencode19 |
Same with |
lnc-TRPV2-1:5 |
Classification |
intergenic |
Length |
993 nt |
Genomic location |
chr17+:16342301..16345342 |
Exon number |
6 |
Exons |
16342301..16342374,16342641..16342728,16342974..16343017,16343499..16343567,16344388..16344444,16344682..16345342 |
Genome context |
|
Sequence |
000001 GGATTGGGAT ATTCCGACTC CTTAAGGGCC TGGCGCACAT AAGGTGTGAC CTTTTCATTC CCGTTGTTAT GGAGGGCCAC 000080
000081 ATCTGCCAGA GCCTGGAGTC TGCGAAGGCC GGGACCCGGT TCCCCGGCCC ACAGTGGGGG TGTGCAAACC CGAGAGAACT 000160 000161 GGATTGCGTA CCCACTGCAG AGTGCTGAAG ACGGGGTAGC CACGAGGTTG CAAATTCGTG AAGAATCAGC ATCATGTTTG 000240 000241 GCAGCTGAGT ATTGGAGCCA GGAGCCTGCC ATGAGGTTTT GAGAACAGAG TGCTGTTTTA GAGCTGGCAG CAGCATCTCA 000320 000321 GCCCAAGAGA AGGTTATATT CCCAGAGGAT GTCAGTCCCA AGGACCAGTA GCTGCCATCA GTTTGGATTC TGAAAACTAA 000400 000401 CTGGCATCAA CACTGGGTGT AGAAACATGC TTGCCTTATG TATCAGAGGA CATGCTCAGC AGATCCAAGA GATATATTTG 000480 000481 GCAACTTTTT CTAGAAAAGG CACATTGGGT ATCATTCATT ACATTCTTGA GTTTTTTTGG GTTTTTTTTT TTTTTTTTGA 000560 000561 GACAGTCTTG CTGTATTGCC CAGGCTGGAG TGTGGTGGCA CAATCACAGC TCATTGCATC CTCAATCACC CAGGCCTAAG 000640 000641 CAATCCTCCC ACCTTGTAGC TGGGACTACA GCTCACAGCA CACCTGGCTA AAATTTTTTT TTTGTTGAGA CGGATTCTCT 000720 000721 ATGTTGCCCA GGCTGGTCTC AGGCTCCTGG GCTCAGATGG TCCTCCTGCC TCAGCTTCCA AAGGCACAGG CCAAGTTGTA 000800 000801 GCTTTGTCCC TTGCCATCAT GCCCAACAAG AGGTTCTATA CCTTTTAATG AATTGACTTT CATAAATTGG TTATGTTGGT 000880 000881 GGGCAAAGTT CTTTAAGCTG GAAATTGTAA ATTCCTCCTG AAATGTTTTT TCATGCAGTT ACCATGAACT AATACTACAA 000960 000961 TAAAGGATGG TCTTGGGTGT CAATTCTTGA AAA |
Predicted Small Protein
Name | ENST00000481898.1_smProtein_68:187 |
Length | 40 |
Molecular weight | 4190.6978 |
Aromaticity | 0.0512820512821 |
Instability index | 51.9230769231 |
Isoelectric point | 4.95758056641 |
Runs | 5 |
Runs residual | 0.0405354449472 |
Runs probability | 0.0 |
Amino acid sequence | MEGHICQSLESAKAGTRFPGPQWGCANPRELDCVPTAEC |
Secondary structure | LLLEELLLHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |