ENST00000496829.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000496829.1 |
Source |
Gencode19 |
Same with |
lnc-CACNA2D3-1:1,NONHSAT090021 |
Classification |
intergenic |
Length |
474 nt |
Genomic location |
chr3+:55212200..55223242 |
Exon number |
3 |
Exons |
55212200..55212444,55220746..55220855,55223124..55223242 |
Genome context |
|
Sequence |
000001 CTCTTAGAAG CCCAAGCACA GAGTTCGGAG AAATGTGAGC ACCTGTATGA AGAGAAGATG GGTACAAAGG AATGAGTGGG 000080
000081 GGTTCCTCTT CACCATCCCT AAAACTGTGG CAGTATTTAG CAGCATCATT GATGAGGCTG GTCTCAGAAC TGTGCAAACA 000160 000161 TCTGCCCTGC CTGGCCTCTC AATGAAAAAG CTTCTACCTC TTAACAGGTA TTTCCACCAA CTCGCTGGCC ACCTCCCTGT 000240 000241 TACAGTGTAA GTCGTACTTC TTTGTCCTTT TCTGGAAATC ACGAATGTGA ATGTCATTTG CAGCATGCAT TCGTGCAGTG 000320 000321 GATGGAAGTT CTCCAGGGAC CAGGCTTTCT TCAAGGCAAT GGGGAGCCAC GGAAATCTTT GAAGCAGAGG AGTGTCCTAT 000400 000401 TCAGAACTCT TCTATTAAAT GATTATTGTG CAGCAGGGTG GAAGCTGGAT TAACAGGAGA AACACTGGAG ACAA |
Predicted Small Protein
Name | ENST00000496829.1_smProtein_290:421 |
Length | 44 |
Molecular weight | 4632.1301 |
Aromaticity | 0.0697674418605 |
Instability index | 82.2255813953 |
Isoelectric point | 5.00238037109 |
Runs | 6 |
Runs residual | 0.0177684870656 |
Runs probability | 0.0285874109404 |
Amino acid sequence | MSFAACIRAVDGSSPGTRLSSRQWGATEIFEAEECPIQNSSIK |
Secondary structure | LLHHHEEELLLLLLLLLLLLLLLLLLEEEEELLLLLLLLLLLL |
PRMN | - |
PiMo | - |