ENST00000499953.2
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000499953.2 |
Source |
Gencode19 |
Same with |
lnc-SWAP70-1:3,NONHSAT017941 |
Classification |
intergenic |
Length |
854 nt |
Genomic location |
chr11+:9779843..9812791 |
Exon number |
4 |
Exons |
9779843..9780050,9801923..9802122,9804587..9804656,9812416..9812791 |
Genome context |
|
Sequence |
000001 GTTCCAGCCC CGACCCGGGC GCGCGGGGCC GACTAGGGTC GGGTCCAGTG TGCGGTGGTC GCTCCGCTCC GGGCCGCTCC 000080
000081 GCTCTGGGCG TCAGGGCGCG GGGAGCTGCC CCGGGGTTCT GTCCACCGGG GAGGAAAGCC ACGAGCACTG AGCGCCTCCT 000160 000161 GAGAGCCAGC CCTGACGTGA ACTCATTTTA TCTGCCACGA CCCAGAAGCA TGAGTTCTTC TGTTTCTTCT GCGTGGGTTG 000240 000241 ACCATGGGCA TCAGGCATCA GAGATACAAC TCTGGATCTT GTCCATCCAT TGCTGGGCAC TCTGTCCATC CTGGGCGCAG 000320 000321 AAGTTATACA CACGTTTGCT GGTCTTGAGC TACAAAACCA AATGACAGTG AACCAGAGAT GAAGGGCAGG GCTGTTTTAT 000400 000401 GGATTTGGGC ATGGTATGAG CAGGGCTAAG TGGAAAAAAC TGTATCTATC TTTCATGTTA AAGAAGTCCA GAAGACTGGG 000480 000481 AAACAGATCC AGATGGAGGA AACATCTGAT AAAGTTTGCC TAAGCAGCCA GCAGTCTATC AATCATGACT CTTCCAACCC 000560 000561 TCATCCTGCA TCTATATCTA GATTCAAAGA AGTCCATGCA GGAGGCAGTC TACACTTTTC AAGAGAAAAT GGAAGGACTT 000640 000641 CAGAGTTGAT TTGATGAAGC TCAGTAAAAA ACATAATTTT ATGTTTCTCT TTTAAGTTGT TGGCTGTTTG TTTATTATGA 000720 000721 AGCCATTTAA AGAGTTTTCT TGTTTAGCAG TGTATATATA CTGCAGATCA TGGTTACTGA GACTCTAGAT GACAGAAGCG 000800 000801 TGTAGTCTGT GTCCTTGGGT GACTTAAAAA TAAAAGCAGA ACTTTTATAC CTTT |
Predicted Small Protein
Name | ENST00000499953.2_smProtein_209:364 |
Length | 52 |
Molecular weight | 5860.7432 |
Aromaticity | 0.117647058824 |
Instability index | 44.468627451 |
Isoelectric point | 8.77105712891 |
Runs | 8 |
Runs residual | 0.00262085032033 |
Runs probability | 0.0285285285286 |
Amino acid sequence | MSSSVSSAWVDHGHQASEIQLWILSIHCWALCPSWAQKLYTRLLVLSYKTK |
Secondary structure | LLLLHHHHHHLLLLLHHHHHHHHHHHHHHHHLHHHHHHHHHHHHHHEEELL |
PRMN | LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiii |