ENST00000500853.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000500853.1

Source

Gencode19

Same with

lnc-CHMP7-1:2,NONHSAT125546

Classification

intergenic

Length

1970 nt

Genomic location

chr8+:23082734..23088439

Exon number

3

Exons

23082734..23083636,23085579..23085666,23087461..23088439

Genome context

Sequence
000001 CTCAGCTTCT GTTCCTCAAC CACGGCCGCC GCGTGGATGC CGCTGCATTC GGAGTCGTTT TGCCACTTGG TCCCAGCGCC 000080
000081 AGGCTTCTCG GTCGGGAGTT GACCTCAGCC TTTCTGTGAC CCAGTTCCTG GCACCCAGCA GGCGCTCGGT GGACGGATGG 000160
000161 GTGGCGGAAT GAAGGACACA GAGGCCACTG CGGGGTCTGG CCTCTAAGAG GCTTTTACGG CCTCCTCCGT CACTACCGGG 000240
000241 CGAGTGATTC AGCCTGCCTT TTTTTTTTTT TTTTTTTTTT GAGATGGAGT CAAGCTCTGT CGCCCAGGCT GGAGTGCAGT 000320
000321 GGCACGATCT CGGCTCACTG CAACCTCCGC CTCCCAGGTT CAAGCGATTT TCCTGCCTCA GCCTCCTGAG TAACTGGGAT 000400
000401 TACAGGTGCC CGCCACCACG TCCGGCTAAT TTTTTTTCTA TTTTTAGTAG AGACGGGGGT TTCACTGTTT TGGCCAGGCT 000480
000481 GGTCTCGAGC TCCTGATCTC GTGATCCGCC CGCTTCGGCC TTACAAAGTG CTGGGATTAC AAGCGTGAGC CACCGTGCCC 000560
000561 GGCTCATCCT GCTTTTGGTT TCAGGTCTCC ATGCCAGTGA AATGTCACCT CAACTCCACC GTCCCTGGTG TCAGGCAAGC 000640
000641 CCGAGGGACC CAATTCTGCC TTTCTTCTGG ATTTTCCTAA CCTGTTAAGA GTCTTGAAAG TCCTTAAACC ACGGGAGACT 000720
000721 ATCTGGCACA TGACACGGGA TGAGACTTGG TGGGGGTCCC ACGGGGGACA GGTCCTTCCA GCGGTTCCTC TGCACCCAGC 000800
000801 GCTGCACGGG CATGGGGCGT GGGTAATCAG CCTCCCGAAA GCCACGCGAG TCACGGTCCT GCCTGCGAAG AACTCCCAGG 000880
000881 GCGACCTTGG GGCTGAGGAG TGGGCCTGCT TCGGCCTTCT GCTCTTCTGT TGTGTGGTGA CCCTCACCAG AGGACAGCTT 000960
000961 CATGCTCTTG GACTTCCCAG CCTCAAGAAC TTCTTGCTCT GTTGCCCAGG CTAGAATGCA GAGGCACCAT CTTGGCTCAC 001040
001041 TGCAACCTCC GCCTACCGGG TTCAAATGAT TCTCCTGCCT CAGCCTCCCG AGTAGCTGGG ATTACAGGCA CCTGCCACCA 001120
001121 TGCCCAGCTA ATTTTTGTAT TTTCAGCAGA GATGAGGTTT TACCATGTTG ACCAGGCTGG TCTTGAACTC CTGACCTCAA 001200
001201 GTGATCCGCC AACCTCGGCC TCCCAAAGTG CTGAGATTAC AGGCATGAGC CACCATGCCC GGCCTCCATC TTTTACTTTC 001280
001281 AATCTATCTG AAGCTTTATA TTTAAGGTGC ATATATTTTA GACAGTTAAT AATTTCAGCT TGCTTTTTTT TTTCCTAGTT 001360
001361 GGGGAAACTC TGCTTTTTAA TTGGATTGTT TATTCTGGTT ACATTTGTTG TTGTGGTGAA ATTTGGAAAG TTCAACCTGC 001440
001441 CACAACGTCT TCACTTACTA TTTTTAAAGG ATATTCTCAA TGAGTGTGAA TAGTGAGTCA ACAGCTTTCT TTCACCATTT 001520
001521 CACACATCCT GAGCCTCCAT TGTTTTGAGT CAGCTGTCGT TCATATCTTT GTTACCTGTG AATGCACAAA ATTTGCTCTG 001600
001601 TATGATGACT ATGATGTGTC CAGGTAGGGT TTTCTTTACA TTTATTTTTA TGAGGGGTTT ATGAACTTTT TGAATCTATA 001680
001681 AGTTGATGTT TTTTCACTAC ATTTGAGACT ATATCAACTT TTTTTTTCTT TCATCTTTTC CAGCCATTTC TTCTTGGTTC 001760
001761 TGGTTCCGTG TGTACTGCAT GATATTGTAC CACGTGTCAC GGAGACTCGC TTCCTTGTTT TCTTTCAGTT TCATTTTCCC 001840
001841 TTGCACTTCA GATGGAATGA TATCTATTGA TCTCTTTTCA AGTTCACTCA TTCTTTCTTC TGTAATGTTC AATCTCTCTT 001920
001921 AAGAAAGTCC AAATAAATTT TTCATTTCAG AGAGTGGAAT TTTCGGTTCT
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Predicted Small Protein

Name ENST00000500853.1_smProtein_1151:1357
Length 69
Molecular weight 7706.681
Aromaticity 0.147058823529
Instability index 61.4177941176
Isoelectric point 6.22747802734
Runs 10
Runs residual 0.00655802861685
Runs probability 0.0186981098746
Amino acid sequence MRFYHVDQAGLELLTSSDPPTSASQSAEITGMSHHARPPSFTFNLSEALYLRCIYFRQLI
ISACFFFS
Secondary structure LEEEEELHHHHEELLLLLLLLLLLLLLEEELLLLLLLLLLLLLLHHHHHHHHHHHHHHHH
HHHHHLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHH
HHHHLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTT
TTTToooo