ENST00000501079.1
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
ENST00000501079.1 |
Source |
Gencode19 |
Same with |
lnc-CTR9-3:2 |
Classification |
intergenic |
Length |
1071 nt |
Genomic location |
chr11+:10879806..10900823 |
Exon number |
3 |
Exons |
10879806..10879913,10886808..10886874,10899928..10900823 |
Genome context |
|
Sequence |
000001 AGGTGATAGC GGAGCGGCTG GGTAGGAAGC AATTGTTCTC AAACTTCACT AGCCCCGTCG GCGCGGACGC TTGTCGAGAA 000080
000081 TGCAGATTCC TGGGTACTGC CAGATACGAA TTGAGCATAC CACAAAAAAG TTCTCATTTT GTGTCCTCCC ATCCCATTCT 000160 000161 CCTCACTAAC CAAAGGCTAG GAATTATCTG TGAATGTAGG ACCACTGGAT TTGCAGTCTT CATCTGACAC TGTGGAGAGT 000240 000241 TTCTAGGAAT GAAACAGATA TATGGCCTTG GGTCCCCTTT TTTTTTCTTT TTTTTTTTTT TAATAGAGAC GAGCATCTCA 000320 000321 CTATGTTGCC TAGGGTAGTC TTGAACTCCT GGCCTCAAGC AATCCCCACC CGACTCCGCC TCTCGAAGTG ATGGGATTAC 000400 000401 AGGCATAAAC CACCACGCCT GGCCAGAAGG TGCTTTAACA CCAAATCTGA AAATTGTTCA GAAGAGAAAC ATTGAGCATG 000480 000481 AACACCATCT GTGCGAGTCA TTTACTTATT GCCCCTCACC TCTAAATCTA CCTTCTGTAC TCTTCTTCCC TGTAATGATG 000560 000561 GGGCTAGTTG TCCTCAAACT GTTTCTCAGA CTTCTTTTTA AGCTTGCTTC CTGTTCAGTT CTGCCAATAG GGGTCACTAG 000640 000641 AGAGAGACTG GGAGGCAGAA GGAGAGAATA TGCTTCCTGT TTTTTCTGTT CTTGTTAATG TTGCTTACAG GACCAGCAAT 000720 000721 GCTTCTTCAC CTAGAGACAC TTCTCCCAGC AGTGGCAGTG CCACTTCAGC TTCTTTCAGC ACTACTGGAA TCAGCCTCAG 000800 000801 TGATTCCCCC TGTACCCGCT CAGAGATTAT CCACAGCAGC CAGATGGTTC TACCTTCCAC AAAGATTGTG GTTGCAATTC 000880 000881 TGGGCTTCTA AGTTCTGGTT ACTTCATATT TTTCCTTTTG TTCCTCCAGC CCTAGAGGTG GTAGCTGCTT TCTGAAGTTA 000960 000961 TTATTTCTAG ATGACTTTTG GTTTTTCAGC CTTTGTATTT TGCTTTTCAG CCCTCTAATG CCTGTATAAC CAATTTCCCT 001040 001041 GTAATAAATA AATTTCCTCC ATTGAAATAC C |
Predicted Small Protein
Name | ENST00000501079.1_smProtein_554:697 |
Length | 48 |
Molecular weight | 5341.5234 |
Aromaticity | 0.106382978723 |
Instability index | 59.7936170213 |
Isoelectric point | 9.92694091797 |
Runs | 9 |
Runs residual | 0.0252127659574 |
Runs probability | 0.0546821331135 |
Amino acid sequence | MMGLVVLKLFLRLLFKLASCSVLPIGVTRERLGGRRREYASCFFCSC |
Secondary structure | LLLHHHHHHHHHHHHHHHLLLLLLLLLEELLLLLLLEELLEEEEELL |
PRMN | LLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | i?????????????????????????????????????????????? |