ENST00000505030.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000505030.1

Source

Gencode19

Same with

lnc-MEF2C-2:13

Classification

intergenic

Length

3558 nt

Genomic location

chr5-:87960263..87969143

Exon number

3

Exons

87960263..87963409,87966854..87966903,87968783..87969143

Genome context

Sequence
000001 ACTCTCCACT CCGAGGCTCA GGGAGCAAGT GCCTGGCATG GGGGGTAAAA GTTGGCTTTT TTTTTACTCC TTGGTCTTTT 000080
000081 GCGCCCTTCT CCCTCTCCCC AGAAGGGAAG ACCCATTTAA ACTATTTTAG ACGCAATCAA CCAAGAATCA CCATGTGGAA 000160
000161 TTGAGCGGCA GTTTTAAATG TGTTGAGCAG GGGAGAGGAA TGATGAGAAA AACATTTTTT TTTTTTTTTT TGGAGACGCC 000240
000241 GAAAGAAGCC TGTTTGTGTG CTGCGGCCGT GCTGTGACTT TGGATCTTGT CTTTCAGCCG GCGCCTCGGT TCCTGCCCAG 000320
000321 CTGGATTTGG GGGGCAGCAT TGCCTGGCGC AGGGAGATCA AATGAGACTG CAAAGAAGCA TAAAATGAAT AGACAATCCA 000400
000401 ACCAACCAAA GACCGGGGGC AGCAGCAGGC CAGCAAGACG GCATCTTCTC CTTCCCAGCC TAGAAGCCCT GTGAAATCGA 000480
000481 GGATCTTCCC CCTAAAACAC ATACACACAA GATATGTGCA ATCAAGCTGC CACCGCTTGG TAAAAAGCCA TGGTGCCTAA 000560
000561 CCAAAAAGGA TCAGGAACAG ATCCTTGAAT CAGCTGTCAC TTCTATAGAA TGGGATTTTT TTTTCCTTCC TCCTTAACCT 000640
000641 GCGCTGGAAA TTGCCGTTGG CTTTATACAT CTCTATAGAG AGAGGCTAAA GAGTCTTGCG TGAGAAAGAA GCAATTTACA 000720
000721 ATGCAAATAG AGGCCTGTGA AGGGACGGAT GCTGCTGCTC ACTCGTAACA GCTTGCTGCA CCTTAATAGC TGGTTTTATT 000800
000801 TTCTGATATT AATAGATGAA TTGTTGGCTA ACGCTGCCGG AGATTACTTG CTGAAAGGAA AAAGAAAAGT TCGGAATAAA 000880
000881 CTCTGAAGGC AACAGATCTC GTTTGGATGT TTTAGCCGCG CACACACACA AACAGAAACC AGGTCATATT TACATAAAAG 000960
000961 GAGGAATCTT AAGCGCGGCA AGTATCCTGG ACGACCACTC TTCGGTACTG CCAGAAAGGA TCAGGACCTG GAGTCTGGCA 001040
001041 AGAGGAAGAC AGAGGCCTGT GTGGGAAGCG AGTTGTTATC TTTGGTTATC TAGCTGTATG AGTGTATTGG TCTTCATAAA 001120
001121 GCTAGATAAC CGAAAGTAAA AACTCCTTCA AGATCGCCGG GGAGCGTGTG AGAATGAAAG ACTACAGCCG AGAGACAGTA 001200
001201 AAAACCAGAA AGGTCAGGAA TACTTATTGA ATCTAACTTT GTTTTTGTTT TGTTTTTTTC CTTATGATTA AAGGTGGGAT 001280
001281 GAGAGAAAAT TAAATGACAC ACACATGCTA AAATATCAAG GTTCCAGATA TGTCTTGAGA GGGGTTGTTG CAGCTGCAAA 001360
001361 GGAGAAGTGT ATAGTGATAA TGAGTAAAGA TGCATGTGCA GTTTGTTCTA TTTTAAGGCA AAAGTTATAT CAGGGATTTT 001440
001441 TTTCTTAGAA AGGTGTTGCA GAGATGTCTG GTACCTAGTT TAAAAATGAT TCCATAATAT GTAGACTTGG GCAGTTCCTT 001520
001521 TGGGAGGCAC CTCCCTCTCA AAATTTGAAG ATTGTGCTTG GAAATTACTT TACATGTATT TGGGCTGTAT GTCAATTTGT 001600
001601 ACGAAATTAG ACTTTCAGAA AAGTTTATAC TGGAAGGTTA ATAATTTGTA TCTACTGAGG ACTTAGAGCT AGCAGGCAAA 001680
001681 ATGAAAAAAA AAAAAAAAAA AGCAAGGGCT GATTTTTATT CTTCTATTCA AAATACAAGG ACAGATGCTT CTCTGTTCCA 001760
001761 AGAGGGTTTC CTTGAGGAAG CTACTGAAGC AGAAAGACAT GATGGAGACG AGATCGCCTC CCCTCTTGTC AAAGTGTTAA 001840
001841 AAAAATGTTC TGTCTTACTC TGCGCCTAGC ATTGGAAATG AAAGTGACAT TTACGCCACA ACCCACGTGT GCGCCTCCTC 001920
001921 TCTTTTTGTT TAAGGATGAT CAGGTCTATC CAGGAAACAG CTCTGGCATC CCAAACTGAA ATAATTAGGA CGTATATAGA 002000
002001 CCTGACAAAA ATGGAAAGGG GGTGGGGAAT CTGAGGGTCT GTCTTGCCTA ATTGATTCCG CTAAACGGAA TGCAGGAGAT 002080
002081 GTGAACGGCA GGACGCTCCG ATTCCCACGC TCGGGGGCAA GTGATAAAGC GGGGCCGGGC AGCCTATGAC AGACAGCCCT 002160
002161 GTTGGGGGGT GGGGGTATGA AAAAAACATC AAGTGCACAC ACCATACTCA TCTCCATCGC TTAAGAAAGT AAAGGCATTT 002240
002241 CCCACCCACA GCCATCTGCA GCTTCCCAAA TGGCAGCACC AACTGGTCTG TAGCTGCTAC ATAGTCTGCT TCTGTTAATT 002320
002321 TTTTAACCAC TGTTTAATCT GGCCATAATT AAGTTTGGCT TTCTTCGTTG TTTGAGATTT TCAGAATTCA AGGCAAGCTA 002400
002401 GTAGAAAGCA ATTCCAAGAA AGTCCCATGA CTGCCTGCCC CTAATGTCAA AATCTCAGTC CATGAGATTA TGGCCTTGTG 002480
002481 ACCACATTTT TGCTTTTGTT TTGGGTGGGC AAATGTGTAT AGAGATAAAA TACATATCTC TATATAACAG TCGTTATTAT 002560
002561 AATTTCATGA GGCTTTTTAC CTCTTAACAT GATACATCTA GGAACTTGGT CTAATTGTGC TAGTAGATAT ACACTAGAAG 002640
002641 TAAAACTATA AAGTCATTAG CCTGTAGAAA GTTGATTATG ATAACAATAT GATAAAAAGT TTGTTTTGGA ATAGTCTCAG 002720
002721 CTAGATGGGT CTAAATAGCC ATTTTAATGT AATCTAAAAA TAACACTATG CCTAGCAGAA ACTTTGGCGC TTTGGAGGTC 002800
002801 CCCATTGTCG CCTTTTCATA AAAGTCCTTA AGTTTTCCAT ATGTCACCAA GCAAACATTT GTATAGGCAT TTACACAGAA 002880
002881 ATATAACCAT TGCAATTAGA AAATATCCAA AATAGCCTGT TATCTTCCAC GTGGCCTAGA TTATTGACAA TCCCAAATAT 002960
002961 ACAATTTTTC TTTAAAAGTA GTACAATTTC CTTTGTAGCT TCAATTCCTT ATATGACTTC AGACTGGAGA AGCCTGTTAA 003040
003041 ACCACTGTTA GTTTCAGTTA GAAAGTCTGA GAGACTTTAT ACATAAATTC TCAATTTGGC TGCTGTACAC GTGCCAGAGT 003120
003121 TTTACTACTG TAGTGACCGT TGAGAAGACC CTTGTTTATT TACATTTGAA GCACTGTTTG TGCAAACAAC CTTTCATTGT 003200
003201 TAAGTGCCTG TATTCCTTTC ATTTACTTCA TGTCCAGGGG TGCTATTTAC CTAGAACCAT TGTCTACTAC AATTAACATT 003280
003281 TACATTACAA AGTGTGTGGT TTTCTTTTTC AAGGAGGTTC AATTAAGGCA ATAAGATGTT TGCTGGAGAA ACCTATTGTT 003360
003361 TACTGAAAGC ACTCAATGAA GTCAAATTAC TGAAGCTTTT GCCTACATCT TGGTCTTTTA TGTAAATATG TTAAATATAA 003440
003441 CATCTAAGGA AAATAAACAA TATTATAATT ATGTGTTTGC CATTGTCATA TCAAACTTGC TTTGTATCAT ACTAATGTTA 003520
003521 CATAACTTAT CGATCAATAA AAATACATTT CAATGTTA
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Predicted Small Protein

Name ENST00000505030.1_smProtein_1304:1447
Length 48
Molecular weight 5274.3216
Aromaticity 0.106382978723
Instability index 40.1446808511
Isoelectric point 9.66351318359
Runs 7
Runs residual 0.0173404255319
Runs probability 0.0251974663739
Amino acid sequence MLKYQGSRYVLRGVVAAAKEKCIVIMSKDACAVCSILRQKLYQGFFS
Secondary structure LLLLLLLLHHHHHHHHHHHHLLEEEELLLHHHHHHHHHHHHHHLLLL
PRMN -
PiMo -