ENST00000505626.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000505626.1 |
Source |
Gencode19 |
Same with |
lnc-SRD5A1-1:2 |
Classification |
intergenic |
Length |
3036 nt |
Genomic location |
chr5+:6582251..6588612 |
Exon number |
5 |
Exons |
6582251..6582379,6582533..6582714,6583716..6583914,6585887..6586140,6586341..6588612 |
Genome context |
|
Sequence |
000001 CCTGGGTTCA GCTTCCCCTG TGAGAAGGAC ACATATAACA ATAAGAAATT AAGGGTTCGG GAAGGAGAGG GGCCACCCTG 000080
000081 TGCTCACCCC CACACAGCCC TGCAGGAAAA CCCAGTGAAC GGTGCCCAGG TTGGAGTCCG AAGGTGACTG ATTTGCGGCA 000160 000161 AGGTTTTCTC TCTTCCTCTG TAAAGTGGAG TCCTTCATCA TTCATCGCAA GTAGACAACT CGCTTCCTAA TGCCTCTGCA 000240 000241 TTAAGGAGCC AGGCGCTGCA GCTCTTTGGT ACGTGACCTC AAATAGATTC ATGCGTCCTT CTGCTGACAC GGTGGCAGAG 000320 000321 GAGAGGGAAG GGTCGCGCCT GGTGGGGGCC TGAGAGCCAC CGGGCTGCGG TGCGCGAGTG TGGACACCGC CCCGCCTTCT 000400 000401 GCGTCTACAG CCCTGGGTTC TGGGACCTTT GGAAACCGCT TTGGACGAAG CTGAGCATCT CTTTCCCCAC GCTGACCTCC 000480 000481 CCCATAGACT CCGGATGGGA GTAAATGAGG CTCCTGGGAA ATCCAGAAAC TCTAGAGAAG CTTGTTTGCC AAACCTTGCT 000560 000561 TTGGGCGGTG GAGACAGAAT ATCATGTCCC AGATCAGCGT GTGGTGACTG TGGAGGCATT TACACACAGC ACACTCCAGC 000640 000641 TCTGCCACTG GGCCGGCTGA GGTGGCTGCG GTACACGGCG CCCATCCTGA GCCCCAGGTT CCTCACATGT CAACAGCATG 000720 000721 AAAAGTGCCT CTAAGACATC CACAGGTGTG CAGTGTTAAA GCAGGCAGCG CCTCAGCTTG GTTAGCTCCC TTAAGGACTG 000800 000801 CGGCTCCCTT AGGACAAGGC TCTGTCCCTC AGAGCACTGA GTGCGATCTC ATGCTGGCAT CTTAGAGACA TTGTATTCAC 000880 000881 CAGGTAAGAT GGATTCACAT CTGCTGGGTG CACGAACACT TCCTCCTTCC TTGCCACCAG CCAGCATCAC AACCAGCCTG 000960 000961 GCCAGGCTCC CGTCCCAGCC CAGCCTAGCA GCTAACCCCA GCTCCATCCC CCAGCAAGCC CCTCTGCCTG CACCTCAGCT 001040 001041 TCTTCATGGA AGACGAGTCA GGTCATGATG CCACCAGGGA GCGTGTTTCC ATGTTGAACT GAGACACTAA GCCCTTGACA 001120 001121 AATGTTGGCC AAGAAAAAAA AGGGGCTCCA AGAGGGGAGC TGTGGCTCAG GTAGAAGACG GTGAATGAGC ATTGCCTGAA 001200 001201 TCAGAGTTAG CTACTCTGGT TACACAGGTG TCCCCGGCAG GTTGGTCAAA AGCCCTTCCC TGAGTCCCGT GATAAGTGTG 001280 001281 GGGAGGGAGG CAAATCAAAG ACCCCTACAC ACCTCCTGCA TGGATGGCCA GAGCGCTGGT CCCACCTCCT TCCTTCCAAA 001360 001361 CTGCAACCCC GATCAGCACA GCAGAGAAGT CTCCTGTGGC AGGGACCAGT AATTCAGTGC TTCCCCTGGA GAGTCTGGGA 001440 001441 TTGCACAGAA CACCAGAGGC TGGGGATTTA TTTGTTCACC AACATTCATT CAACAAACAC TTACTGAGGC CAACACTGGG 001520 001521 AATGGAGACG AACTTCCCTG TCCTCATGGA GCTTGCTTTC AAAAGGGAAG GAGGCAGACA GTAAACAAAA CAAGCAAGTC 001600 001601 AATATACAGC ATGATGCAGA AAAGGTGTGA TGCCACCCTC TTGCCTGAGT TTATAACAAG CAGATGATGT TGTCCTAAGA 001680 001681 ATTAATTTCA GCCGGTGAAA GAGTACAGGC AAAAAACGTG GTCTCGGACT TTCCGGTGAT GCTTAAGAAC ATAGTTGCAG 001760 001761 TTTTTGTTCT GATTCTTTGT GCATCTCGCG CTAATGAAGG ATTCTGCCAT GATTGCCACC TCTGGAGACG TCACAGCCAG 001840 001841 CACAGCCATG ACCAGGGATG AACTTGGCCA TTGTCCAGCA GCACCATGGG AGGACCAGCT GCTGTAAGTG AAGGTCATCA 001920 001921 TCCATCTGAT TTGCTGGCTT TTTGCAACTA CTGCGGTGGA AGTCTTAGAG TAGCCACCTT CTCTGTACTC AGACCTTCAC 002000 002001 TTCGCCAGAT GTCAGCACAG CAGTGTCAGC AGCTTCGTCA AACACAAACA CCACCACCTC TCTGGATCAG AAGCACATGG 002080 002081 AAAGCCCACC TTGCAAGAAG ACCCAGCTAT TCCAAAAGTA CCCATATCCC TGTAGCATCC TCTTAGCTGA ATGTCTCTAC 002160 002161 TCCTTAAACT TGTACCACTT TGAAGAGTAA AAATTTAAAT TCATTCATAT TATCATTTTT TAGTTTTTAG TATAAGTGGA 002240 002241 GCTGTTTATC GGCCATTTGT ATGTCCTTTT CTTTTTTTTG CAAATTACTC CTTTGCCAAA TTTTCTCTCA AATGACTCAT 002320 002321 CTTTTTCTTA TTGATTTGCA GAAGCTATTT ACATATTATG GATGTGGGGT GTCTAACATA CACAGCAAAT ACTTTGTCCC 002400 002401 AGTGTGTCAC TTTTTAAAAA AATTCTTATA ATGTCTTTCA TCTTTAAAAA ATTATTAAGC TATTGTGAGC TTTTATGCCT 002480 002481 TTTCAGTTTA TTTTCTTACA TAGATAATTA TATGAAGTGC AAATAGGGGC AGTGTTAGTC TCATCTTCCC AAGGCTGCAC 002560 002561 CTCAGATGTG GAATGTTGAC AGCAACATCT GTTACCTTGT TTCTGTTTTT AGGATTTTAG CGTTAAGGCC AGGCATAATG 002640 002641 GTTCATGCCT GTAATTCCAG CACTTTGGGA GGCCGAGGTG GGCAGATCAC TTGAAGCCAG GAGTTCAAGA CCAGCCTGGC 002720 002721 CAACATGGAG AAACCCTCTC TATTTTTAAA TACATTTAAA ATGTTAACAA TTAAAACAAA ATATTTTACC GTTAGTATGA 002800 002801 TGCTTGATAC AGGATTTCTG GTACATACGC CTTATCAAAT TAAATAAGTT TCCTTTTACT CTTGTTTATT GTTATTTTTT 002880 002881 AAAATAAGGA ATGAATCTTG GATTTTAGTG TATCAATAAT TATATTTTAT TCTTTAACTT CATAATATTC CTTATAATTC 002960 002961 CTTATGTCAT ATTAAAGATG TAAATTCATA TATATTTTAT CATACAAATG ATTAATAAAT GTATAAGCAT GTCATT |
Predicted Small Protein
Name | ENST00000505626.1_smProtein_494:733 |
Length | 80 |
Molecular weight | 8581.8372 |
Aromaticity | 0.0506329113924 |
Instability index | 74.4607594937 |
Isoelectric point | 9.14752197266 |
Runs | 15 |
Runs residual | 0.0495925091035 |
Runs probability | 0.025089795678 |
Amino acid sequence | MGVNEAPGKSRNSREACLPNLALGGGDRISCPRSACGDCGGIYTQHTPALPLGRLRWLRY TAPILSPRFLTCQQHEKCL |
Secondary structure | LLLLLLLLLLLLLHHHLLHHHLLLLLLEEELLLLLLLLLLLEELLLLLLLLLLLLEELEE LLLLLLLLLLLLLHHHLLL |
PRMN | - |
PiMo | - |