ENST00000505626.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000505626.1

Source

Gencode19

Same with

lnc-SRD5A1-1:2

Classification

intergenic

Length

3036 nt

Genomic location

chr5+:6582251..6588612

Exon number

5

Exons

6582251..6582379,6582533..6582714,6583716..6583914,6585887..6586140,6586341..6588612

Genome context

Sequence
000001 CCTGGGTTCA GCTTCCCCTG TGAGAAGGAC ACATATAACA ATAAGAAATT AAGGGTTCGG GAAGGAGAGG GGCCACCCTG 000080
000081 TGCTCACCCC CACACAGCCC TGCAGGAAAA CCCAGTGAAC GGTGCCCAGG TTGGAGTCCG AAGGTGACTG ATTTGCGGCA 000160
000161 AGGTTTTCTC TCTTCCTCTG TAAAGTGGAG TCCTTCATCA TTCATCGCAA GTAGACAACT CGCTTCCTAA TGCCTCTGCA 000240
000241 TTAAGGAGCC AGGCGCTGCA GCTCTTTGGT ACGTGACCTC AAATAGATTC ATGCGTCCTT CTGCTGACAC GGTGGCAGAG 000320
000321 GAGAGGGAAG GGTCGCGCCT GGTGGGGGCC TGAGAGCCAC CGGGCTGCGG TGCGCGAGTG TGGACACCGC CCCGCCTTCT 000400
000401 GCGTCTACAG CCCTGGGTTC TGGGACCTTT GGAAACCGCT TTGGACGAAG CTGAGCATCT CTTTCCCCAC GCTGACCTCC 000480
000481 CCCATAGACT CCGGATGGGA GTAAATGAGG CTCCTGGGAA ATCCAGAAAC TCTAGAGAAG CTTGTTTGCC AAACCTTGCT 000560
000561 TTGGGCGGTG GAGACAGAAT ATCATGTCCC AGATCAGCGT GTGGTGACTG TGGAGGCATT TACACACAGC ACACTCCAGC 000640
000641 TCTGCCACTG GGCCGGCTGA GGTGGCTGCG GTACACGGCG CCCATCCTGA GCCCCAGGTT CCTCACATGT CAACAGCATG 000720
000721 AAAAGTGCCT CTAAGACATC CACAGGTGTG CAGTGTTAAA GCAGGCAGCG CCTCAGCTTG GTTAGCTCCC TTAAGGACTG 000800
000801 CGGCTCCCTT AGGACAAGGC TCTGTCCCTC AGAGCACTGA GTGCGATCTC ATGCTGGCAT CTTAGAGACA TTGTATTCAC 000880
000881 CAGGTAAGAT GGATTCACAT CTGCTGGGTG CACGAACACT TCCTCCTTCC TTGCCACCAG CCAGCATCAC AACCAGCCTG 000960
000961 GCCAGGCTCC CGTCCCAGCC CAGCCTAGCA GCTAACCCCA GCTCCATCCC CCAGCAAGCC CCTCTGCCTG CACCTCAGCT 001040
001041 TCTTCATGGA AGACGAGTCA GGTCATGATG CCACCAGGGA GCGTGTTTCC ATGTTGAACT GAGACACTAA GCCCTTGACA 001120
001121 AATGTTGGCC AAGAAAAAAA AGGGGCTCCA AGAGGGGAGC TGTGGCTCAG GTAGAAGACG GTGAATGAGC ATTGCCTGAA 001200
001201 TCAGAGTTAG CTACTCTGGT TACACAGGTG TCCCCGGCAG GTTGGTCAAA AGCCCTTCCC TGAGTCCCGT GATAAGTGTG 001280
001281 GGGAGGGAGG CAAATCAAAG ACCCCTACAC ACCTCCTGCA TGGATGGCCA GAGCGCTGGT CCCACCTCCT TCCTTCCAAA 001360
001361 CTGCAACCCC GATCAGCACA GCAGAGAAGT CTCCTGTGGC AGGGACCAGT AATTCAGTGC TTCCCCTGGA GAGTCTGGGA 001440
001441 TTGCACAGAA CACCAGAGGC TGGGGATTTA TTTGTTCACC AACATTCATT CAACAAACAC TTACTGAGGC CAACACTGGG 001520
001521 AATGGAGACG AACTTCCCTG TCCTCATGGA GCTTGCTTTC AAAAGGGAAG GAGGCAGACA GTAAACAAAA CAAGCAAGTC 001600
001601 AATATACAGC ATGATGCAGA AAAGGTGTGA TGCCACCCTC TTGCCTGAGT TTATAACAAG CAGATGATGT TGTCCTAAGA 001680
001681 ATTAATTTCA GCCGGTGAAA GAGTACAGGC AAAAAACGTG GTCTCGGACT TTCCGGTGAT GCTTAAGAAC ATAGTTGCAG 001760
001761 TTTTTGTTCT GATTCTTTGT GCATCTCGCG CTAATGAAGG ATTCTGCCAT GATTGCCACC TCTGGAGACG TCACAGCCAG 001840
001841 CACAGCCATG ACCAGGGATG AACTTGGCCA TTGTCCAGCA GCACCATGGG AGGACCAGCT GCTGTAAGTG AAGGTCATCA 001920
001921 TCCATCTGAT TTGCTGGCTT TTTGCAACTA CTGCGGTGGA AGTCTTAGAG TAGCCACCTT CTCTGTACTC AGACCTTCAC 002000
002001 TTCGCCAGAT GTCAGCACAG CAGTGTCAGC AGCTTCGTCA AACACAAACA CCACCACCTC TCTGGATCAG AAGCACATGG 002080
002081 AAAGCCCACC TTGCAAGAAG ACCCAGCTAT TCCAAAAGTA CCCATATCCC TGTAGCATCC TCTTAGCTGA ATGTCTCTAC 002160
002161 TCCTTAAACT TGTACCACTT TGAAGAGTAA AAATTTAAAT TCATTCATAT TATCATTTTT TAGTTTTTAG TATAAGTGGA 002240
002241 GCTGTTTATC GGCCATTTGT ATGTCCTTTT CTTTTTTTTG CAAATTACTC CTTTGCCAAA TTTTCTCTCA AATGACTCAT 002320
002321 CTTTTTCTTA TTGATTTGCA GAAGCTATTT ACATATTATG GATGTGGGGT GTCTAACATA CACAGCAAAT ACTTTGTCCC 002400
002401 AGTGTGTCAC TTTTTAAAAA AATTCTTATA ATGTCTTTCA TCTTTAAAAA ATTATTAAGC TATTGTGAGC TTTTATGCCT 002480
002481 TTTCAGTTTA TTTTCTTACA TAGATAATTA TATGAAGTGC AAATAGGGGC AGTGTTAGTC TCATCTTCCC AAGGCTGCAC 002560
002561 CTCAGATGTG GAATGTTGAC AGCAACATCT GTTACCTTGT TTCTGTTTTT AGGATTTTAG CGTTAAGGCC AGGCATAATG 002640
002641 GTTCATGCCT GTAATTCCAG CACTTTGGGA GGCCGAGGTG GGCAGATCAC TTGAAGCCAG GAGTTCAAGA CCAGCCTGGC 002720
002721 CAACATGGAG AAACCCTCTC TATTTTTAAA TACATTTAAA ATGTTAACAA TTAAAACAAA ATATTTTACC GTTAGTATGA 002800
002801 TGCTTGATAC AGGATTTCTG GTACATACGC CTTATCAAAT TAAATAAGTT TCCTTTTACT CTTGTTTATT GTTATTTTTT 002880
002881 AAAATAAGGA ATGAATCTTG GATTTTAGTG TATCAATAAT TATATTTTAT TCTTTAACTT CATAATATTC CTTATAATTC 002960
002961 CTTATGTCAT ATTAAAGATG TAAATTCATA TATATTTTAT CATACAAATG ATTAATAAAT GTATAAGCAT GTCATT
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Predicted Small Protein

Name ENST00000505626.1_smProtein_494:733
Length 80
Molecular weight 8581.8372
Aromaticity 0.0506329113924
Instability index 74.4607594937
Isoelectric point 9.14752197266
Runs 15
Runs residual 0.0495925091035
Runs probability 0.025089795678
Amino acid sequence MGVNEAPGKSRNSREACLPNLALGGGDRISCPRSACGDCGGIYTQHTPALPLGRLRWLRY
TAPILSPRFLTCQQHEKCL
Secondary structure LLLLLLLLLLLLLHHHLLHHHLLLLLLEEELLLLLLLLLLLEELLLLLLLLLLLLEELEE
LLLLLLLLLLLLLHHHLLL
PRMN -
PiMo -