ENST00000506041.2
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000506041.2 |
Source |
Gencode19 |
Same with |
, |
Classification |
intergenic |
Length |
1626 nt |
Genomic location |
chr5-:87704799..87734907 |
Exon number |
6 |
Exons |
87704799..87705762,87722319..87722610,87725176..87725305,87725598..87725667,87731797..87731860,87734802..87734907 |
Genome context |
|
Sequence |
000001 GTGTGAGGAC CCACCTAGAA GTCACCATCT ATGAAGCAGG AAGCAGGCCC TCAGCAGACA TGAAATCTCC TGGTGCTTTG 000080
000081 ATTTGGACTT CCCAGCCTCT AGAACTAGGC CAAGAAACTT GAAAAAGTGA TAGAAGCAGG GTACCTTTTG CATCATCAAA 000160 000161 CACAGCTCAG GTGTCTTCTG AGAAGTCATT TTGATACAGT ATGAATTCAA TAAGACAAGT CTTCCATTGA GCATGCTTGG 000240 000241 GTACTGGTGA GGAATCACCT GGGGTTGTTA CCATTGAGAA CTAGCAGAAC AGTAACCATC ATTTGCTCCA ATGACACACG 000320 000321 GTGCATCTCT TATGCTATTA GAAGCAGGAC AGCTGGATAT AAGCAACCAG GTACAGCTGG AATAGAAAAG ATAGACAGTG 000400 000401 GATTCTTTGG CTTCATCCAA GTGGGCTGAG GATTGAAGTA TTTTTCCAGT CATGTTCTTG AACACCTACT TTCATGGCAT 000480 000481 GCTGACATTT CCAGACTACT GAAGATGTGA TGATTAACTG ATCCTGCATT TGATGAAAAA AAAAGTTTGC ACATTCCAAA 000560 000561 GGAGATAGGT TTCAAATGAC TATATAGGGT ACAATTTCCA CTGAAGTGAT TTCTCTTAAT CTTAATCCTT AACCACTCTC 000640 000641 ATTGCTACAG TACCTTCCAA AAATTAGGAG CCGGGGAGGG ATGAGAAGTT AATTGAGCTG AGCATCTCAG GAACAGGAAG 000720 000721 TCACAGCTGA GCAGCGAGAG TTGATTCCAC CAAGAAAAGA AATCAGCCTG GACAGAAATC TTCATCTCAA TACCAAAAGG 000800 000801 CCCTTTTGAG TTTTTCTAGC AAGAGTCCCC AGTTCCGGGA AGCCAAGCAC AGGGCAAACT CTCTGTGTAA TGGCTTCCAG 000880 000881 ACTGCTTGGT TTTGGATCCC TTCTCACATA GTCTGAAGGG AAAGGAGGCG TACTTATTTC ATTAGATTAT ATGGAACATC 000960 000961 AGAAATCAGG TGGGGTGGCA GTGGTGGAAT CTCTTAAAAG TTTTTTGAAT TCCTTAGTCA CTGAACTGGT TCTAGTTAAA 001040 001041 ACTAAAATCC TGAGCAAAGA GATTAAACAA AAGAAAACAA TATCACAGAT ACTGAACAAA AGGAAATAGT TCATGTATCT 001120 001121 GAAGAGCTCT TTAATCCTAA GCATAGTCAA GAAATAGTTG AGGGGACTTG CCTAAATCAA TTTCACTTCA GAATGAAGAC 001200 001201 AATGTCTGGG TCACTGACCA ACATTAATAG AAGAAAAAAA ATCATTAGCT AAATAATGAA GTGACAGGAG TGAAGGAAGG 001280 001281 TGAGAGGAAA GAACACACTA AAAAGGAAAA CAGAAGACAT GAGCAAAGTA CAAAGGAAAA GTAAAAGAAG TTGAATTTTT 001360 001361 CTCATTTTTT TCCACTTTGA TAAAACATTC AAAACAAAGA GTATAACCAT ACCTACTGTA TAAAGGTTTA ACATGCAGGA 001440 001441 ATTAGTTACA CATCAACATA AGACCAGTTA GAAGTTCACG TCCAAGGTCA ATGATACATT TTTCTTATTG CAAATCTTAT 001520 001521 ATTTAGAAAC CTAACTATGA GGTATGAGGA CTGACCCTGA CAAAAAGACA AACATTTTAC AAAACCAAAA TACACCTAAT 001600 001601 TCTCTAAATA AAAATGTTTT CATCAA |
Predicted Small Protein
Name | ENST00000506041.2_smProtein_950:1108 |
Length | 53 |
Molecular weight | 5850.9575 |
Aromaticity | 0.0192307692308 |
Instability index | 41.2384615385 |
Isoelectric point | 10.1735229492 |
Runs | 6 |
Runs residual | 0.0349847892221 |
Runs probability | 0.0165753989283 |
Amino acid sequence | MEHQKSGGVAVVESLKSFLNSLVTELVLVKTKILSKEIKQKKTISQILNKRK |
Secondary structure | LLLLLLLLEEEHHHHHHHHHHHHHHHLHHHHHHHHHHHHHHHHHHHHHHLLL |
PRMN | - |
PiMo | - |