ENST00000506476.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000506476.1 |
Source |
Gencode19 |
Same with |
lnc-ASTE1-1:1,NONHSAT092129 |
Classification |
intronic(AS) |
Length |
591 nt |
Genomic location |
chr3-:130772161..130791183 |
Exon number |
3 |
Exons |
130772161..130772523,130773312..130773429,130791074..130791183 |
Genome context |
|
Sequence |
000001 CTTTAATCCA CCTCTGCATG TGATCATCTG CATTTGACTC CTTGAACTAT GGCAGCCAGC TGGAGCCATG AAGTAAGCCA 000080
000081 CCCTAACATG AGTGGCAGAA ACATGGAGAG ACAGGGTTTC ACCATAATGG CCAGGCTGCT CTCCACCTCC TGGGCTCAAG 000160 000161 CGATCCACCC ACCTCAGCCT CCCAAAATGT TGGGATTGCA GATATGAGCC ATAGTTCCCC TCCATCAGCC CAAATGTCAG 000240 000241 TTCCTGGAGT ACAAAGGCGG TGGCTGCTTC AGATGCTTCA GACTGAAACT GCTCTTTGCC ATTCTCATGG ACACTGGAGA 000320 000321 GTTAAGTTTG GTTAAATTGA TGCCTTTTTC TTTTAAAAAA GAAAGAATAC ACATATACCT TTGTGTACAC ACAAGCTAGG 000400 000401 AAACATCAAT CTAATACATG GATGGCAAGA AAAACCAGAT CTGGCTCATG CCAGTTACAA TGGTCTGTGA AGATAAAAAG 000480 000481 ATTTCTTCAG ATTTATTTCT CAGCCAATTT CTGCTTTTCC TAGGGAGAAA TTAAAAGTTT GTTAAATACC TATGTTTAGC 000560 000561 CTTTTATTAA TTTAGCCGGT GAAATTAAAA G |
Predicted Small Protein
Name | ENST00000506476.1_smProtein_203:334 |
Length | 44 |
Molecular weight | 4900.6075 |
Aromaticity | 0.0697674418605 |
Instability index | 111.323255814 |
Isoelectric point | 10.7631225586 |
Runs | 5 |
Runs residual | 0.0410243010191 |
Runs probability | 0.032803391627 |
Amino acid sequence | MSHSSPPSAQMSVPGVQRRWLLQMLQTETALCHSHGHWRVKFG |
Secondary structure | LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLEEEEEL |
PRMN | - |
PiMo | - |