ENST00000506655.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000506655.1 |
Source |
Gencode19 |
Same with |
lnc-MTRR-5:2,NONHSAT100318 |
Classification |
intergenic |
Length |
2702 nt |
Genomic location |
chr5+:8839871..8842572 |
Exon number |
1 |
Exons |
8839871..8842572 |
Genome context |
|
Sequence |
000001 GTCGAAGGGG CCCGAGGCCC CGAGAAGGGC AGGATGCGAT GCTGGGTGTG TGACCTCAGC CATGGAAGGG CCACCTGCCA 000080
000081 CCGGGGGGCT GGGCCGTCGG GCCTTTGGTT GTGGAGGGAA AAGAGTGGCC ACTTGCTGGA GCTGGGAACG TGCAGTGATG 000160 000161 AGCACTAGGA CAAGAGGACC GTGACAAACA GACATAGAAG GTAAAACTGC CCGAGTACAG GCTGATCCAC AGACCTGTGT 000240 000241 CCAGGGAGAG GCCTCAGGAT GGATTTGGAA ATGCAGGACA GGTTCATGAA ATCCTCACAC ACCTGCCACA TACTCAAGGA 000320 000321 GGGTGCTGTT TACTTGATTG ATTGTGCTGG TCCTGAACAT CTGACATGAT TTGTGGTTAT AAATGGGTGT TTGCCGTTAA 000400 000401 CTATAAGTAT CTTGGAGTAA TTTAACAAAC AACAATAGGT ATTGGGGCAG GTCAGCGCGT CTCCACCTGA AAGACAAAGG 000480 000481 AAAGCCGTGA ACGCAGGACC AGCAGTTGTG GCTCACGGTG AGAGGTGACA GCGTGGTAGC ATCCCTTGCT GGCTCTGGGC 000560 000561 GCGTCCTCGG CCTCGGCGTC CGCTCTGGCC GCGCTCAAGG AGCTCTTCAG CCCGCCGCTG CGCTATGAGG GCCTCTCTCT 000640 000641 GGGGCTGGCG GAGGCCGGAG CCTGCTCCCT CTGCTGGCGG GGAGGTGTGA AGAGAAAGGC ACTGGCTGGA GCCGGCGCTG 000720 000721 CGCGCGGCGC TCGCGGCCCA GCGCTTGGGT TCCAGGTGAG CTCCGGCTCT GCAAGCCCCG CACTCGGCGT GGCCGGCCGG 000800 000801 CGCCTGCTGG GCTTGATCGG AGACTGAATC CCTGCGTGGA CCACCGTTCC CTCTTCGCGG GATTGTTGGC CACCATAGCC 000880 000881 GATCTCCGTC TCTTTCTCTC TTCCCCTCTT TTCCTCTTGA TTGTCTGGAA CTAGCTCCCT CTGGGCTGCC GGATTACCCG 000960 000961 GCCCGCCAAG TTCCGCAGCG AGAGCCAGTG AGAGATGATG CCGGCTGGGC TTCTGGGACG GTTGGGGACT TGGAGAACTT 001040 001041 TTGTGTCTAA CTAAAGGATT GTAAACGCAC CAATCAGCAC TCTGTGTCTA GCTAAAGGTT TGTAAATGCA CCAATCAGCT 001120 001121 CTCTGTCAAA ACGGACCAAT CAGCTCTCTG TAAAATGGAC CAATCAGCTG CCTGTAAAGC GGACCAATCA GCAGGATGTG 001200 001201 GGTGGGGCCA AATAAGGGAC TAAAAGCAGG CCACCAGAGC AGGCCGCTGC AGCTTGCTCG GGTTCTCTCT CTGCTCTGTG 001280 001281 GAAACGTTGT TGTTTAGCTC TTTGCAGTGA ATCTGGCTGC TGCTTATTGT TTGGGACTGT GCCACCTTTT TTTTTTTTTT 001360 001361 TTTTTTTTTG AGACAGATTC TTGTTCTGTC TCTTAGGCTG GAGTGCAGTG GCGTGGTCTC GGCTAACTGC AAGCTCCGCC 001440 001441 TCCCAGGTTC ACGCCGTTCT CCTATTTCAG TCTTTCCGGT AGCTGGGACT ACAGGCGCCC ACCACAATGC CTGGCTAATT 001520 001521 TGCGCCATCT TTAAGAGCTG TAACACTCAC CGCTAAGGTC TGCAGCTTCA CTCCTGAAGC CAGCCAGACT ACGAACCCTT 001600 001601 ACTACGAACC CATCAGCTGG AAGGAACAAT TCCAGACAAT TCCACACAGG AGGAAGCAAC AACTCTGGAT GTGCCACCTT 001680 001681 TAGGAACTGT ACCACTCACG GGAAGGTCTG CAGCTTCACT CCTGAAGTGA GCAAGACTAC GAACCTACCG GGAGGAAGGA 001760 001761 ACAAATTACG GACACACCAT TCTTTAAGAA CTGTAACAAA CCCGCGAGGG TCCGCAGCTT CATTCTTGAA GTCAGCGAGA 001840 001841 CCAAGAACCC ACTAATTCCA TACGCAATGG GTTCATTTCT TTTTTTTTTT TTTTTACAAA AGTCTTCTCT GTGCTGACTT 001920 001921 AAGGGGACAC TTTGTGTCAC TTCCAGGGAA GGATGCGCTG GGGTCCCGAC ATTCTGTCAG GGTCCAAACA CCCTCGTTCC 002000 002001 TCATCCAGGG CATGGAGCAC CTGAGTAGGA TGGAACATTT GGGAAAAACC CCACCTCAGT CCCAGGCCCG GCAGCCTGAG 002080 002081 GAGATCTAAG GCTGGCTGGG CATTCGAGCT GTAAGAGCAG GGAGTGTTTA CTGCACCCAG GAGAGGTGAT CAGGACACAA 002160 002161 TTTCACTATT TCTGGTTGTT TTAGAATCAG GTTCCTTTGT CTCCTTATTT TACCTCAGTT ACATTTTCCA AGATCCTAGG 002240 002241 ACTCACAGAA GGATGCAGTC GGTGGGGGCA GAGTGCTGTA CCAGGGCCTC CAGACATGGT TTCTAGACAC TGGCTCATGT 002320 002321 GATGGCACCA GGGCCCCCAG CCATGGTTTC TAGACATTTG GTCATACCAT GGCCTTGGTT GATGACCCCA TCCATCGGAT 002400 002401 TTCATCCTCC TCAAAACGAA ACAGAAGGTT TAGCCCAGCA GATCTCTGGA GTCTGTGATT TTCAGATGAG AGCCCAATTG 002480 002481 ATGGTGAAGC ATAACAAGAG TACGGTTGAT TTCATTCCTT CAGCATTCAC TTATTCCATG TGTGTGTAAA GCCTGATCTG 002560 002561 TGTTGGAGAG CTCAGCATGC AGACATGACG TGATGGAGCT GTGGCTCTAC AGTTACCCCT CACCATAGTA AACAGATGCA 002640 002641 CAATTACTTT TGATTATGTT CGTGTAATAA AGGTAGTTAA AGTTCAACAT TTATCAGAAA AA |
Predicted Small Protein
Name | ENST00000506655.1_smProtein_2321:2548 |
Length | 76 |
Molecular weight | 8357.7109 |
Aromaticity | 0.0933333333333 |
Instability index | 41.5746666667 |
Isoelectric point | 6.80438232422 |
Runs | 13 |
Runs residual | 0.0243971631206 |
Runs probability | 0.0419876890466 |
Amino acid sequence | MAPGPPAMVSRHLVIPWPWLMTPSIGFHPPQNETEGLAQQISGVCDFQMRAQLMVKHNKS TVDFIPSAFTYSMCV |
Secondary structure | LLLLLLLEEELEEELLLLLLLLLLLLLLLLLLLLHHHHHHHHHHLLHHHHHHHHHHHLLL LLLEELLLLEEEEEL |
PRMN | - |
PiMo | - |