ENST00000506655.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000506655.1

Source

Gencode19

Same with

lnc-MTRR-5:2,NONHSAT100318

Classification

intergenic

Length

2702 nt

Genomic location

chr5+:8839871..8842572

Exon number

1

Exons

8839871..8842572

Genome context

Sequence
000001 GTCGAAGGGG CCCGAGGCCC CGAGAAGGGC AGGATGCGAT GCTGGGTGTG TGACCTCAGC CATGGAAGGG CCACCTGCCA 000080
000081 CCGGGGGGCT GGGCCGTCGG GCCTTTGGTT GTGGAGGGAA AAGAGTGGCC ACTTGCTGGA GCTGGGAACG TGCAGTGATG 000160
000161 AGCACTAGGA CAAGAGGACC GTGACAAACA GACATAGAAG GTAAAACTGC CCGAGTACAG GCTGATCCAC AGACCTGTGT 000240
000241 CCAGGGAGAG GCCTCAGGAT GGATTTGGAA ATGCAGGACA GGTTCATGAA ATCCTCACAC ACCTGCCACA TACTCAAGGA 000320
000321 GGGTGCTGTT TACTTGATTG ATTGTGCTGG TCCTGAACAT CTGACATGAT TTGTGGTTAT AAATGGGTGT TTGCCGTTAA 000400
000401 CTATAAGTAT CTTGGAGTAA TTTAACAAAC AACAATAGGT ATTGGGGCAG GTCAGCGCGT CTCCACCTGA AAGACAAAGG 000480
000481 AAAGCCGTGA ACGCAGGACC AGCAGTTGTG GCTCACGGTG AGAGGTGACA GCGTGGTAGC ATCCCTTGCT GGCTCTGGGC 000560
000561 GCGTCCTCGG CCTCGGCGTC CGCTCTGGCC GCGCTCAAGG AGCTCTTCAG CCCGCCGCTG CGCTATGAGG GCCTCTCTCT 000640
000641 GGGGCTGGCG GAGGCCGGAG CCTGCTCCCT CTGCTGGCGG GGAGGTGTGA AGAGAAAGGC ACTGGCTGGA GCCGGCGCTG 000720
000721 CGCGCGGCGC TCGCGGCCCA GCGCTTGGGT TCCAGGTGAG CTCCGGCTCT GCAAGCCCCG CACTCGGCGT GGCCGGCCGG 000800
000801 CGCCTGCTGG GCTTGATCGG AGACTGAATC CCTGCGTGGA CCACCGTTCC CTCTTCGCGG GATTGTTGGC CACCATAGCC 000880
000881 GATCTCCGTC TCTTTCTCTC TTCCCCTCTT TTCCTCTTGA TTGTCTGGAA CTAGCTCCCT CTGGGCTGCC GGATTACCCG 000960
000961 GCCCGCCAAG TTCCGCAGCG AGAGCCAGTG AGAGATGATG CCGGCTGGGC TTCTGGGACG GTTGGGGACT TGGAGAACTT 001040
001041 TTGTGTCTAA CTAAAGGATT GTAAACGCAC CAATCAGCAC TCTGTGTCTA GCTAAAGGTT TGTAAATGCA CCAATCAGCT 001120
001121 CTCTGTCAAA ACGGACCAAT CAGCTCTCTG TAAAATGGAC CAATCAGCTG CCTGTAAAGC GGACCAATCA GCAGGATGTG 001200
001201 GGTGGGGCCA AATAAGGGAC TAAAAGCAGG CCACCAGAGC AGGCCGCTGC AGCTTGCTCG GGTTCTCTCT CTGCTCTGTG 001280
001281 GAAACGTTGT TGTTTAGCTC TTTGCAGTGA ATCTGGCTGC TGCTTATTGT TTGGGACTGT GCCACCTTTT TTTTTTTTTT 001360
001361 TTTTTTTTTG AGACAGATTC TTGTTCTGTC TCTTAGGCTG GAGTGCAGTG GCGTGGTCTC GGCTAACTGC AAGCTCCGCC 001440
001441 TCCCAGGTTC ACGCCGTTCT CCTATTTCAG TCTTTCCGGT AGCTGGGACT ACAGGCGCCC ACCACAATGC CTGGCTAATT 001520
001521 TGCGCCATCT TTAAGAGCTG TAACACTCAC CGCTAAGGTC TGCAGCTTCA CTCCTGAAGC CAGCCAGACT ACGAACCCTT 001600
001601 ACTACGAACC CATCAGCTGG AAGGAACAAT TCCAGACAAT TCCACACAGG AGGAAGCAAC AACTCTGGAT GTGCCACCTT 001680
001681 TAGGAACTGT ACCACTCACG GGAAGGTCTG CAGCTTCACT CCTGAAGTGA GCAAGACTAC GAACCTACCG GGAGGAAGGA 001760
001761 ACAAATTACG GACACACCAT TCTTTAAGAA CTGTAACAAA CCCGCGAGGG TCCGCAGCTT CATTCTTGAA GTCAGCGAGA 001840
001841 CCAAGAACCC ACTAATTCCA TACGCAATGG GTTCATTTCT TTTTTTTTTT TTTTTACAAA AGTCTTCTCT GTGCTGACTT 001920
001921 AAGGGGACAC TTTGTGTCAC TTCCAGGGAA GGATGCGCTG GGGTCCCGAC ATTCTGTCAG GGTCCAAACA CCCTCGTTCC 002000
002001 TCATCCAGGG CATGGAGCAC CTGAGTAGGA TGGAACATTT GGGAAAAACC CCACCTCAGT CCCAGGCCCG GCAGCCTGAG 002080
002081 GAGATCTAAG GCTGGCTGGG CATTCGAGCT GTAAGAGCAG GGAGTGTTTA CTGCACCCAG GAGAGGTGAT CAGGACACAA 002160
002161 TTTCACTATT TCTGGTTGTT TTAGAATCAG GTTCCTTTGT CTCCTTATTT TACCTCAGTT ACATTTTCCA AGATCCTAGG 002240
002241 ACTCACAGAA GGATGCAGTC GGTGGGGGCA GAGTGCTGTA CCAGGGCCTC CAGACATGGT TTCTAGACAC TGGCTCATGT 002320
002321 GATGGCACCA GGGCCCCCAG CCATGGTTTC TAGACATTTG GTCATACCAT GGCCTTGGTT GATGACCCCA TCCATCGGAT 002400
002401 TTCATCCTCC TCAAAACGAA ACAGAAGGTT TAGCCCAGCA GATCTCTGGA GTCTGTGATT TTCAGATGAG AGCCCAATTG 002480
002481 ATGGTGAAGC ATAACAAGAG TACGGTTGAT TTCATTCCTT CAGCATTCAC TTATTCCATG TGTGTGTAAA GCCTGATCTG 002560
002561 TGTTGGAGAG CTCAGCATGC AGACATGACG TGATGGAGCT GTGGCTCTAC AGTTACCCCT CACCATAGTA AACAGATGCA 002640
002641 CAATTACTTT TGATTATGTT CGTGTAATAA AGGTAGTTAA AGTTCAACAT TTATCAGAAA AA
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Predicted Small Protein

Name ENST00000506655.1_smProtein_2321:2548
Length 76
Molecular weight 8357.7109
Aromaticity 0.0933333333333
Instability index 41.5746666667
Isoelectric point 6.80438232422
Runs 13
Runs residual 0.0243971631206
Runs probability 0.0419876890466
Amino acid sequence MAPGPPAMVSRHLVIPWPWLMTPSIGFHPPQNETEGLAQQISGVCDFQMRAQLMVKHNKS
TVDFIPSAFTYSMCV
Secondary structure LLLLLLLEEELEEELLLLLLLLLLLLLLLLLLLLHHHHHHHHHHLLHHHHHHHHHHHLLL
LLLEELLLLEEEEEL
PRMN -
PiMo -