ENST00000507963.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000507963.1 |
Source |
Gencode19 |
Same with |
lnc-FAM172A-2:3,NONHSAT102807 |
Classification |
intergenic |
Length |
922 nt |
Genomic location |
chr5-:92889459..92916761 |
Exon number |
4 |
Exons |
92889459..92889569,92890580..92890701,92899070..92899169,92916173..92916761 |
Genome context |
|
Sequence |
000001 GCGCTTCCTG GTCTCTCCAG CCTACAAGTC GGGAGTCGGC GACCGCTTAG TGACGAGCGA TGATTTTAAA GAGCAGAATA 000080
000081 AAAGGTTTTC CCGTGCCTGC CCCACAGCCC CTCCAGCTCG AATAATGGAG AACTGTCAAT GCACTCCGCG AGCGGTGGCC 000160 000161 CATTGTACGC AGCTGATGGC GAGGAGGCGA CTGGGGGTAG CAGGGGCTCC TTGCCCTCGT CCCTATGCCC AAATAAACGC 000240 000241 GCAAACGCGC TCCCGTCTTC TGGTCAGTTA AAAGGTGAAA CGAACACGAT TAAAATAGAC CAAAAGAAAA GAAAGAAAAG 000320 000321 AAAACCTTTC TATGTACAGA TTCTAAATCG TACTCCCCAT ACAGTCAGAG GCAGGGAGTC GAGGGCAGAG GCAGCAGGCG 000400 000401 GAGAGAGGGA GATAGGGCGA GGGAAGGAGA ACGCGGAGAG AGACGAAGGG AGTGGGAGAC CAGCGACAGC GAGCGCCAGG 000480 000481 GCACCGCAGG CACACTGGAT GCCCAGTCCG CCGGCCCAGC CGCCCTCGGA CCCTGGACCG TGCGTCGTGG GCACCAGAAA 000560 000561 CGAGACTCGG CCAAATCCTG CCTCACCAGC AGGTAGATGA AACTCAAGAG AAAAGGTGTG GATAAATGAA ACTAGCCCAT 000640 000641 GATGAACCTG TTTTCTCCGT GACCACAATA TTAACCAGGA TGAATGGCGG TGGCAGTGGG CCTGCATCAC AGGTTGCAGC 000720 000721 AGATGTTCTC AATATTTCTA TTAAAATTTC CTTATTTCCA TATGCAAGAG GAGCCCCAGA GCTGCATCCT TATGGTAGCT 000800 000801 ACCATGCCGT GATGTAAGCT GCCATTCACT GGGGAGCTTT GGCAATAGAA TTGGCTAGAT CAGGAAGCCT ATGTCAACTA 000880 000881 TGGAACAACA ACTTGCAGCT CATCTCTATT GATGGTGAGT CA |
Predicted Small Protein
Name | ENST00000507963.1_smProtein_683:811 |
Length | 43 |
Molecular weight | 4921.9126 |
Aromaticity | 0.119047619048 |
Instability index | 78.5857142857 |
Isoelectric point | 6.80682373047 |
Runs | 7 |
Runs residual | 0.00949367088608 |
Runs probability | 0.0212986095339 |
Amino acid sequence | MAVAVGLHHRLQQMFSIFLLKFPYFHMQEEPQSCILMVATMP |
Secondary structure | LHHHLHHHHHHHHHHHHHHHLLLLLLLLLLLLEEEEEEEELL |
PRMN | - |
PiMo | - |