ENST00000508056.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000508056.1 |
Source |
Gencode19 |
Same with |
lnc-RP11-826N14.2.1-2:1,NONHSAT105314 |
Classification |
intergenic |
Length |
1605 nt |
Genomic location |
chr5-:175600355..175626298 |
Exon number |
13 |
Exons |
175600355..175600566,175602151..175602215,175602837..175602904,175603285..175603453,175603762..175603826,175607327..175607351,175607819..175607889,175609623..175609766,175610234..175610304,175612104..175612345,175613165..175613383,175614406..175614599,175626239..175626298 |
Genome context |
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Sequence |
000001 CCCCAGCGCC CACTGGGGAT GGCAAAGACG ACATCCGGTG CGCCGAGGCT GCTCACAAAA TCACTCACCT GTGGCGCCCT 000080
000081 TGGCCGCTCA GTCAAGGCTC TGAATATCCT GAGACTGCCC CACTGCTTGG AAGCCCCGGA CACCAGAGAG TTTCCTGTAG 000160 000161 GTCCTCCAGC CGAGCCCGAT GACCCCGGCA GGCCCGGGAG TGATGTCCCC CTCTGGATGA TCCCAACCCC TTGCTGTGGA 000240 000241 TTCAGCCCCA GCCGTTGTTG TGTCTTTTGG GGACCTTGTC AGTTGCCTTC CAAGTGCTAA TTCTCATGAC GAGATAAGAA 000320 000321 TGGCTATGAC TGGGTGTTGA TTGATGAGTC GAACACATTG AATCCTGGAG TTTGAGGTTA TCAGAACTCC CCACTTAGAA 000400 000401 AATCATCCTT TATATTTTAG AAAATCATCA TTGTATGTTG AACATACAAT GCTTCTTTTT TCTTCATCTC CAGTGCACTG 000480 000481 GTCTAGAGAG CGGCAGTTGG ACCCCAGAGT GTGGCACGTG TTCCTGTGTT CATTTGAACA TTCTCTGATG ACCTGTCGCT 000560 000561 GAGGTCCTGT GATGATGCGT ATCCTGTCTT CCACCCCAAC TGCCACTGTG TTTCAACTGT CGCTGGCTGT GTTTCAACTG 000640 000641 CCGCTGTGTT GGAACTGCCA GCTAGACTGC TCACCAAAAT GGGAGGCAGC CTCTGCTGCT GTGGTGAAGG TGAAGGCTTC 000720 000721 TTCTACCGCC AGAATTGGCG GTTTCTCTCG CTGGATTCTT GGGACCTGAT CCAGGCAGCA CACTCGACAC ACTCAGCGAT 000800 000801 TCAGCTCTAC AGTATGCACT CTGGGATCTC CCATTTGCTA AGGAAGGATC TTAGCTTTGA GAAAGGTGAC ACTTTCCTCC 000880 000881 CTACTTTTGC TGGAGAACTA CCCTGGTTTG AGCTTCCTGC TGGAAATGAG TGGCAAGAGA TCCCCTCTTG AGGAGACTCC 000960 000961 GCAGGAACAC CAGAGATGAT AGTGACACAC AACAACTGAA GGCAGAGGTA CAGGCTGAGG AGAAAGGTGT CAAGCCTGTG 001040 001041 GCAGCAGAGC TTCCTGGGGA GTCCTCAGAG CAAGTCATTG CCATTGTCGA AGTGTCTTCT AGGCTTTATT TTGGGGCCAT 001120 001121 TACCTCGAGC ACTGTTTCTT GTCTGGTTTC CTAATGTCAG CAACTGAAGA AAAGACCTGT ATACACAGGA CACAGCATGG 001200 001201 TCTGACGCTC ACAGTGTTTT CCTTTCTCTC TGCAGAGGGA TTCAGCACTT TGGGCAAGTG GTTGCACAGA GGATCCCGTG 001280 001281 GAAGAATTCA TATATGAATC AGATGAGAAT GCCCCAGGAC CATCGTAGAT ACCAACAAGC CCTCTCCCGG CACCTGCAGA 001360 001361 AAAAGTGGGG AAAATCCCCG AAGAGGCAGA AACATTCATC CGGAAGGGCC GCCAGCCAGT GGATTTCCCG GGCCCCTCAG 001440 001441 CCCTCTGGAG TGTACGAGTT TTGGAGAAAC CTCTTCCTCT GTATATGCTT TTGACTTTCC TGGACTGATG TAAAAATACT 001520 001521 CTTTTCTTTG ACCTGTTTAT TTTTAAGACA CGATGTGATT GTGTCAGCTT ATATTTTATT GCTGAAGTAA ATTTTCAAAT 001600 001601 GTTTT |
Predicted Small Protein
Name | ENST00000508056.1_smProtein_434:547 |
Length | 38 |
Molecular weight | 4146.8318 |
Aromaticity | 0.108108108108 |
Instability index | 72.1324324324 |
Isoelectric point | 5.21844482422 |
Runs | 6 |
Runs residual | 0.017604760724 |
Runs probability | 0.0219189778013 |
Amino acid sequence | MLNIQCFFFLHLQCTGLESGSWTPECGTCSCVHLNIL |
Secondary structure | LLLEEHHHHHHLLLLLLLLLLLLLLLLLEEEEEEEEL |
PRMN | - |
PiMo | - |