ENST00000508056.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000508056.1

Source

Gencode19

Same with

lnc-RP11-826N14.2.1-2:1,NONHSAT105314

Classification

intergenic

Length

1605 nt

Genomic location

chr5-:175600355..175626298

Exon number

13

Exons

175600355..175600566,175602151..175602215,175602837..175602904,175603285..175603453,175603762..175603826,175607327..175607351,175607819..175607889,175609623..175609766,175610234..175610304,175612104..175612345,175613165..175613383,175614406..175614599,175626239..175626298

Genome context

Sequence
000001 CCCCAGCGCC CACTGGGGAT GGCAAAGACG ACATCCGGTG CGCCGAGGCT GCTCACAAAA TCACTCACCT GTGGCGCCCT 000080
000081 TGGCCGCTCA GTCAAGGCTC TGAATATCCT GAGACTGCCC CACTGCTTGG AAGCCCCGGA CACCAGAGAG TTTCCTGTAG 000160
000161 GTCCTCCAGC CGAGCCCGAT GACCCCGGCA GGCCCGGGAG TGATGTCCCC CTCTGGATGA TCCCAACCCC TTGCTGTGGA 000240
000241 TTCAGCCCCA GCCGTTGTTG TGTCTTTTGG GGACCTTGTC AGTTGCCTTC CAAGTGCTAA TTCTCATGAC GAGATAAGAA 000320
000321 TGGCTATGAC TGGGTGTTGA TTGATGAGTC GAACACATTG AATCCTGGAG TTTGAGGTTA TCAGAACTCC CCACTTAGAA 000400
000401 AATCATCCTT TATATTTTAG AAAATCATCA TTGTATGTTG AACATACAAT GCTTCTTTTT TCTTCATCTC CAGTGCACTG 000480
000481 GTCTAGAGAG CGGCAGTTGG ACCCCAGAGT GTGGCACGTG TTCCTGTGTT CATTTGAACA TTCTCTGATG ACCTGTCGCT 000560
000561 GAGGTCCTGT GATGATGCGT ATCCTGTCTT CCACCCCAAC TGCCACTGTG TTTCAACTGT CGCTGGCTGT GTTTCAACTG 000640
000641 CCGCTGTGTT GGAACTGCCA GCTAGACTGC TCACCAAAAT GGGAGGCAGC CTCTGCTGCT GTGGTGAAGG TGAAGGCTTC 000720
000721 TTCTACCGCC AGAATTGGCG GTTTCTCTCG CTGGATTCTT GGGACCTGAT CCAGGCAGCA CACTCGACAC ACTCAGCGAT 000800
000801 TCAGCTCTAC AGTATGCACT CTGGGATCTC CCATTTGCTA AGGAAGGATC TTAGCTTTGA GAAAGGTGAC ACTTTCCTCC 000880
000881 CTACTTTTGC TGGAGAACTA CCCTGGTTTG AGCTTCCTGC TGGAAATGAG TGGCAAGAGA TCCCCTCTTG AGGAGACTCC 000960
000961 GCAGGAACAC CAGAGATGAT AGTGACACAC AACAACTGAA GGCAGAGGTA CAGGCTGAGG AGAAAGGTGT CAAGCCTGTG 001040
001041 GCAGCAGAGC TTCCTGGGGA GTCCTCAGAG CAAGTCATTG CCATTGTCGA AGTGTCTTCT AGGCTTTATT TTGGGGCCAT 001120
001121 TACCTCGAGC ACTGTTTCTT GTCTGGTTTC CTAATGTCAG CAACTGAAGA AAAGACCTGT ATACACAGGA CACAGCATGG 001200
001201 TCTGACGCTC ACAGTGTTTT CCTTTCTCTC TGCAGAGGGA TTCAGCACTT TGGGCAAGTG GTTGCACAGA GGATCCCGTG 001280
001281 GAAGAATTCA TATATGAATC AGATGAGAAT GCCCCAGGAC CATCGTAGAT ACCAACAAGC CCTCTCCCGG CACCTGCAGA 001360
001361 AAAAGTGGGG AAAATCCCCG AAGAGGCAGA AACATTCATC CGGAAGGGCC GCCAGCCAGT GGATTTCCCG GGCCCCTCAG 001440
001441 CCCTCTGGAG TGTACGAGTT TTGGAGAAAC CTCTTCCTCT GTATATGCTT TTGACTTTCC TGGACTGATG TAAAAATACT 001520
001521 CTTTTCTTTG ACCTGTTTAT TTTTAAGACA CGATGTGATT GTGTCAGCTT ATATTTTATT GCTGAAGTAA ATTTTCAAAT 001600
001601 GTTTT
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Predicted Small Protein

Name ENST00000508056.1_smProtein_434:547
Length 38
Molecular weight 4146.8318
Aromaticity 0.108108108108
Instability index 72.1324324324
Isoelectric point 5.21844482422
Runs 6
Runs residual 0.017604760724
Runs probability 0.0219189778013
Amino acid sequence MLNIQCFFFLHLQCTGLESGSWTPECGTCSCVHLNIL
Secondary structure LLLEEHHHHHHLLLLLLLLLLLLLLLLLEEEEEEEEL
PRMN -
PiMo -