ENST00000510145.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000510145.1 |
Source |
Gencode19 |
Same with |
lnc-SLCO6A1-1:1 |
Classification |
intergenic |
Length |
944 nt |
Genomic location |
chr5-:101944860..102007263 |
Exon number |
2 |
Exons |
101944860..101945470,102006931..102007263 |
Genome context |
|
Sequence |
000001 CTCGTGGTGC GCCGTTTTTT AAGCCCATCA GAAAAGCGCA GTATTCGGGT GGGAGTGACC CGACTTTCCA GGTGCCGTCC 000080
000081 ATCACCCCTT TCTTTGACTC GGAAAGGGAA CTCCCTGACC CCTTGCGCTT CCCGAGTGAG GCAATGCCTC GCCCTGCTTC 000160 000161 GACTCGCGCA TGGTGCGCGC ACGCACTGAC CTGCGCCCAC TGTCTGGCAC TCCCTAGTGA GATGAACCCG GTACCTCAGA 000240 000241 TGGAAATGCA GAAATCACCA GTCTTCTGCG TCGCTCACGC TGGGAGCTGT AGACCGGAGC TGTTCCTATT CGGCCATCTT 000320 000321 GTCTCCTCCC GTGAACTGGA AATTCCCTGT CTCCCCTTAA CCAGCACTGG AAGCAGATGG GAAGAGAATA GCTGTGACTG 000400 000401 ACTCACACTC TAACCCAGCA ACCCTCAGCA TACAAGTGGG AGACCATAAA GTTTTTCAAG ACCCCAAAAG AGGCCAAAGG 000480 000481 TCTGATAATT GCTGGGAGAA GGTCCACTAT CCAAGAAGAG AAGAGGAAAA GGAATTAAAG TCTCCAAGCA CTGGGGATGC 000560 000561 AAGAAGAGAG TTGCACAGGA GAGAAAGAAG AAGTTGTCCA CGGGGTGACC CTGCAATTGG AGGGAAATGC ATGTGGATAT 000640 000641 GTGCAGGGAG TCTAGGAAGT GAAGCCTTAG TGATCATTTA CAAGAATGAG GGTTAGGTAA AATAAGGGAT GCAAAGCCAC 000720 000721 CTGTAGTCTA TTCTAACCTC ACTCCATCAC TCTATACAAT CTGTGTTTTA TCATCTGAAA TGTTAAGTAA AGACCTGTTT 000800 000801 GGGTCTTCTT CAGAATCCCA TACATTTGAG TTCATTAGTC AGAAAAAGGG AAAATACCAC CACCCCATCC TGGAATGGCA 000880 000881 GTCATGTACA CTTTTATAAT GAGAGATTGG GCAGCAAAGG GGGCCCCTTG TGGACCTCAC CCAG |
Predicted Small Protein
Name | ENST00000510145.1_smProtein_143:400 |
Length | 86 |
Molecular weight | 9369.773 |
Aromaticity | 0.0588235294118 |
Instability index | 73.0752941176 |
Isoelectric point | 6.03082275391 |
Runs | 11 |
Runs residual | 0.00713012477718 |
Runs probability | 0.0364375070257 |
Amino acid sequence | MPRPASTRAWCAHALTCAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPELFLFGHLV SSRELEIPCLPLTSTGSRWEENSCD |
Secondary structure | LLLLLLHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLEEEEELLLLLLLLLEEELEEE LLLEEEELLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |