ENST00000510145.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000510145.1

Source

Gencode19

Same with

lnc-SLCO6A1-1:1

Classification

intergenic

Length

944 nt

Genomic location

chr5-:101944860..102007263

Exon number

2

Exons

101944860..101945470,102006931..102007263

Genome context

Sequence
000001 CTCGTGGTGC GCCGTTTTTT AAGCCCATCA GAAAAGCGCA GTATTCGGGT GGGAGTGACC CGACTTTCCA GGTGCCGTCC 000080
000081 ATCACCCCTT TCTTTGACTC GGAAAGGGAA CTCCCTGACC CCTTGCGCTT CCCGAGTGAG GCAATGCCTC GCCCTGCTTC 000160
000161 GACTCGCGCA TGGTGCGCGC ACGCACTGAC CTGCGCCCAC TGTCTGGCAC TCCCTAGTGA GATGAACCCG GTACCTCAGA 000240
000241 TGGAAATGCA GAAATCACCA GTCTTCTGCG TCGCTCACGC TGGGAGCTGT AGACCGGAGC TGTTCCTATT CGGCCATCTT 000320
000321 GTCTCCTCCC GTGAACTGGA AATTCCCTGT CTCCCCTTAA CCAGCACTGG AAGCAGATGG GAAGAGAATA GCTGTGACTG 000400
000401 ACTCACACTC TAACCCAGCA ACCCTCAGCA TACAAGTGGG AGACCATAAA GTTTTTCAAG ACCCCAAAAG AGGCCAAAGG 000480
000481 TCTGATAATT GCTGGGAGAA GGTCCACTAT CCAAGAAGAG AAGAGGAAAA GGAATTAAAG TCTCCAAGCA CTGGGGATGC 000560
000561 AAGAAGAGAG TTGCACAGGA GAGAAAGAAG AAGTTGTCCA CGGGGTGACC CTGCAATTGG AGGGAAATGC ATGTGGATAT 000640
000641 GTGCAGGGAG TCTAGGAAGT GAAGCCTTAG TGATCATTTA CAAGAATGAG GGTTAGGTAA AATAAGGGAT GCAAAGCCAC 000720
000721 CTGTAGTCTA TTCTAACCTC ACTCCATCAC TCTATACAAT CTGTGTTTTA TCATCTGAAA TGTTAAGTAA AGACCTGTTT 000800
000801 GGGTCTTCTT CAGAATCCCA TACATTTGAG TTCATTAGTC AGAAAAAGGG AAAATACCAC CACCCCATCC TGGAATGGCA 000880
000881 GTCATGTACA CTTTTATAAT GAGAGATTGG GCAGCAAAGG GGGCCCCTTG TGGACCTCAC CCAG
[back to top]

Predicted Small Protein

Name ENST00000510145.1_smProtein_143:400
Length 86
Molecular weight 9369.773
Aromaticity 0.0588235294118
Instability index 73.0752941176
Isoelectric point 6.03082275391
Runs 11
Runs residual 0.00713012477718
Runs probability 0.0364375070257
Amino acid sequence MPRPASTRAWCAHALTCAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPELFLFGHLV
SSRELEIPCLPLTSTGSRWEENSCD
Secondary structure LLLLLLHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLEEEEELLLLLLLLLEEELEEE
LLLEEEELLLLLLLLLLLLLLLLLL
PRMN -
PiMo -