ENST00000512571.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000512571.1 |
Source |
Gencode19 |
Same with |
lnc-SH3RF2-2:1,NONHSAT104375 |
Classification |
intergenic |
Length |
654 nt |
Genomic location |
chr5+:144809431..144820738 |
Exon number |
3 |
Exons |
144809431..144809488,144816561..144816794,144820377..144820738 |
Genome context |
|
Sequence |
000001 TGCCACCACC ACATATGTTA GCCTGCTGGA GGACGACAGC CAGCCAACCT CCAGACATCT TCTTGACAGC AAGTAATGTG 000080
000081 CTTCACTCAT CTTTGCACAC CAACCACAGA ACCCAATATC CTCCACATAA TAAATTCCCA ATGTGATTGA TAAATTCAAC 000160 000161 TGTGGATTAT GTTAGACCAG ACACCAGCTG CTGATAAACT GTCTCTGACT TGGACATCTC AGTGGCTGTG TAGAGAGAGC 000240 000241 AGCCTTGCTG AGGAGGCGTT GAGAAAAGAA AAAGAAAACT TTACCATCTC TGAAACTTTT AATGAATTTA AGGGGAAAAT 000320 000321 TATACATCTC AACAGAAAGC GCTTACCCTC TCTGAACCAT GTTCCTCCTG TGGTCACAAG AGGCTCATTA GGCTGGCCTT 000400 000401 AAAAACAGCA GTTGGGACAA CGAGAAAGCT CCACAGAAAA TCATGATGAG CAGTGTTCAT TATCTATTCA TGAGCACCTT 000480 000481 TCTTGCATAT TTAGCATTTG CAAAATATTG GATGTCATCA GCATATGGGA GTCCAGGAGA AATCTCACCT TCTTGCAAAG 000560 000561 ACAAAAATGG AAACGGCTGA GTCTTTCTAC CCAGTTGAGG GAACCCAATC TGAACATGAC GCCTAGTTGT TCTTTGACTC 000640 000641 AGTTTAAATG ATGT |
Predicted Small Protein
Name | ENST00000512571.1_smProtein_14:145 |
Length | 44 |
Molecular weight | 4947.5928 |
Aromaticity | 0.093023255814 |
Instability index | 53.988372093 |
Isoelectric point | 9.30352783203 |
Runs | 7 |
Runs residual | 0.0054873268879 |
Runs probability | 0.0149266913973 |
Amino acid sequence | MLACWRTTASQPPDIFLTASNVLHSSLHTNHRTQYPPHNKFPM |
Secondary structure | LLLEEELLLLLLLLEEEELLLHHHHLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |