ENST00000515728.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000515728.1

Source

Gencode19

Same with

lnc-PPP3CA-3:1,NONHSAT097565

Classification

intergenic

Length

824 nt

Genomic location

chr4-:101581436..101596270

Exon number

4

Exons

101581436..101581826,101586804..101586917,101595176..101595428,101596205..101596270

Genome context

Sequence
000001 CTCCCCTGAA TTCATTTGCT GTGGCAAATA TGGCTTCCTT AAAATCTGCT GTTTATGAAA ATACAGGACA CAACAAAAAG 000080
000081 ACAGCTGTCT GCAAGTCATG AAGACAGCCA TTACCAGGAA CCAAACTGAA TGGTACCTTG ATCTTGTGCT TTTCGGTCTC 000160
000161 GAGAGCTGTG AGAAACAAAT GCCTGCTGTT CAAATTGTCC AGCCTATGGT ATTTTGTTAC GGCAGTCTGA GCTGACCAAG 000240
000241 ATAACCGGAA ACCTAGAAAA AAAACTGAGA GACTAGATAA CACATGCTCC AGAAAAAAAA GTACTTGATC CAGAAAAAGT 000320
000321 TGAGGAAGGA GATATCTTTT TCAGTTGTGC GTCAATTTCA GTATGTTGCC TGCAATAACA AATAAATAAT TGATGAACTA 000400
000401 AATGGACGTT ATGTCATATA AACTCTTAAT AAGAACACCT ATGAATATTT ATGAAGAGCA TAATTTTACA GAGGAACACC 000480
000481 CAAGTAATGG TCACAGGAAT TGAAGAGCTT GCAAGGGTCA AGCGCTAATC AGTGATGGAA CTTGGTTTTA AACTCCATTA 000560
000561 TTTCCTGCAG CAGAGTCTAC ATCCTCAAAT GTTTCACCAT GCCATCTACA GTCTGATGTG CTTTCCAGAT TTCTCACCAT 000640
000641 TCCACTTGAT CTCCTTTAAA TGACTTTGAT TTGAGAGTGT GCATCTTCAA ATATAGTGCT CAGAACTGGA TGCAATGCTC 000720
000721 ACAATATCAT GTGACCAGCA CTAAGTCGAT ACAAGTTTAT TCCTTTGAAT TTGTCCTGGC GTTTGACAAG GATATTGTGG 000800
000801 ATATTAAAGA TATTTATTTC ACAA
[back to top]

Predicted Small Protein

Name ENST00000515728.1_smProtein_401:502
Length 34
Molecular weight 4004.4444
Aromaticity 0.0909090909091
Instability index 56.9787878788
Isoelectric point 5.77337646484
Runs 6
Runs residual 0.00230566534914
Runs probability 0.0443090148974
Amino acid sequence MDVMSYKLLIRTPMNIYEEHNFTEEHPSNGHRN
Secondary structure LLEEEEEHHHLLLLLHHHLLLLLLLLLLLLLLL
PRMN -
PiMo -