ENST00000518105.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000518105.1 |
Source |
Gencode19 |
Same with |
lnc-TSPAN5-2:1,NONHSAT097480 |
Classification |
sense |
Length |
691 nt |
Genomic location |
chr4-:98307111..98554974 |
Exon number |
5 |
Exons |
98307111..98307208,98308965..98309053,98313793..98313879,98493799..98493869,98554629..98554974 |
Genome context |
|
Sequence |
000001 TGCGGGGTAT AATCTCGTGG TGCGCCGTTT TTTAAGCCCG TCGGAAAAGC GCAGTATTCG GGTGGGAGTG ACCCGATTTT 000080
000081 CCAGGTGCTG TCCGTCACCC CTTTCTTTGA TTAGGAAAGG AACTCCCTGA CCCCTTGCGC TTCCCGAGTG AGGCAATGCC 000160 000161 TCGCCCTGCT TCGGCTCGCG CACGGTGCGC GCACCCACTG ACCTGCGCCC ACTGTCTGGC ACTCCCTAGT GAGATGAACC 000240 000241 CGGTACCTCA GATGGAAATG CAGAAATCAC CCGTCTTCTG CGTCGCTCAG GCTGGGAGCT GTAGACTGGA GCTGTTCCTT 000320 000321 TTCGGCCATC TTGGCGCCTC CCTCAGGTCT CACAGTTTGG AGGATAGAAT GGGAAAATGC TGATTGCAAG TTATTTCCGA 000400 000401 CATCCTTGAA CTTACCTCCC ACATGTGAAT CACAGCTTCT ACTGCATGCC CACTCCTTTT GCCTAAATAT GCAGTTATCA 000480 000481 TCATACATCC AGAATTGCCC TCTGAAATAA TCACAGACTC CCACTGGCAC AAAGAAGAAC ACATCACCTA GTCTTGGAAA 000560 000561 GAGGAGGAAG TAAGGAAAGT CTTCCAGGAG CCCGTCAGAC TTTAAGAAAA TGGCATCTTC TACTTCCTGT TCCTTGGGAT 000640 000641 GCTTACTCTT GGAGCACAGC CACCAAGCTG TGAGAAGTGC AATCCATACG G |
Predicted Small Protein
Name | ENST00000518105.1_smProtein_155:382 |
Length | 76 |
Molecular weight | 8180.5928 |
Aromaticity | 0.04 |
Instability index | 53.288 |
Isoelectric point | 8.67767333984 |
Runs | 14 |
Runs residual | 0.0377304964539 |
Runs probability | 0.049650490827 |
Amino acid sequence | MPRPASARARCAHPLTCAHCLALPSEMNPVPQMEMQKSPVFCVAQAGSCRLELFLFGHLG ASLRSHSLEDRMGKC |
Secondary structure | LLLLHHHHHHLLLLLLHHHHHLLLLLLLLLLHHHEELLLEEEEELLLLLHHHHHHHHHHL LLLLLLLHHHHLLLL |
PRMN | - |
PiMo | - |