ENST00000518324.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000518324.1

Source

Gencode19

Same with

lnc-SH2D4A-2:3,NONHSAT125357

Classification

intergenic

Length

519 nt

Genomic location

chr8+:18949243..18972534

Exon number

3

Exons

18949243..18949398,18952957..18953179,18972395..18972534

Genome context

Sequence
000001 GGGGAGACAC CAGAGCACCA ACTTCTCTCA CTTAAACCTT ATGACAACCT TAAGAAGTAG GCAGCATGAT CCCCTTCTTG 000080
000081 GAAATGCAGA AAGAGAGAAT GGGGGAGATT GAGAGGCTTG CAGAATGTGA CATCATTAGG GAGAACAGTG GTTGAGGTCC 000160
000161 AGCAGCTCCT GCAGATGGGT GGTGGTGGAA GGAGGAGAGA ATGGGCCACA GGCAGGCCAA GGGCAAGCTT AGCAGCACTC 000240
000241 AACATCCTCC ATGAACTCAA CAGAAGTCAA GAATGCAGGC AGCTCATGAT GAAGACCTGC AGCGGCCCAG GTTTACCAAG 000320
000321 CTCATTCACA ATTGCAGTTG GAGAATTCGT CTTTGGTCAT TTTCTACTTT GGAAATACGA GACAGGATCT CCCTCTGTTG 000400
000401 TGCAGGCTGG TCTCAAACTC CTGCCTTCAA GCGATCTTCC TGCCTGGCCT CCCAAAGTGT TGGAATTACA GGCATGAGCC 000480
000481 ACTGCACCCG CCCAGTAAAT CCTTTCTGAT ACACCCTTA
[back to top]

Predicted Small Protein

Name ENST00000518324.1_smProtein_272:508
Length 79
Molecular weight 8939.1993
Aromaticity 0.0897435897436
Instability index 68.8794871795
Isoelectric point 9.40228271484
Runs 13
Runs residual 0.0329893683552
Runs probability 0.0479053714348
Amino acid sequence MQAAHDEDLQRPRFTKLIHNCSWRIRLWSFSTLEIRDRISLCCAGWSQTPAFKRSSCLAS
QSVGITGMSHCTRPVNPF
Secondary structure LLLLLLLLLLLLLLHHHHLLLLEEEEEEELLEEEEELEEEEEELLLLLLLLLLLLEEELL
LEEEEELLLLLLLLLLLL
PRMN -
PiMo -