ENST00000520576.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000520576.1 |
Source |
Gencode19 |
Same with |
lnc-C8orf76-1:3,NONHSAT128523 |
Classification |
intronic(AS) |
Length |
1347 nt |
Genomic location |
chr8-:124213412..124214983 |
Exon number |
2 |
Exons |
124213412..124214222,124214448..124214983 |
Genome context |
|
Sequence |
000001 ACATCATCTA CTAAATTGAT TTCACACCCC GCTAATGGAT GGTGAGGCAC AGTTTGAAAA ACTGCATTCT TTCAGGACAC 000080
000081 TGAATGGTCA GAACCCAATG TGCTTTTATT CATTCATTCA ACAAATATTT GTGGCCATGT ATAATGTATC AGGTGCTGTA 000160 000161 TTTACTGTAC TTCATGCCAG GAAAGCAACA GAGAAGAAAA CATACCCAGT CCAGTCCCTG ACCTCATGTC ATTTACAATC 000240 000241 TCGGCTAATC AAGTTCACAA ATAAATAATT CCAAATCATG ATGGGAGTGA AGCCATAGAG GATAAGAGGG CTCGGGGTGG 000320 000321 TGATCAGAGG TCTCTGAGGC AATGATCTGG AAGCTGCCAC CTACAAGATA AAGAGTAAGC AAGATAGAGA CAGCAGGAAT 000400 000401 GAGCTCTCCG ACGGAGGGCA TGAACAGCAA GTGCAAAGGC CCTGCGACTC GAAAGAGCAT GAAAGACTGA GGAAGCGGCC 000480 000481 AGTGTGGCTC CAACACAGTG GAGGAGTGGG GGGATCCTAC TGAGATAGAG GCCCTGGGCT GAATAATTCT CATCCTTCAA 000560 000561 GGCCCAACTC CAGCCAATGG CACCGACCTC CTGGACCTGC TAGGCAGAAG TGGTGGCTCC CTCTCAGCTG ACCCCAGAGC 000640 000641 ACTTCCTTAG CTCCTGCTGA TCTCAGAGCA CACACACCAA TCCACTCTGG CCACTCAGCA ATTTTTCTTG ATGGCCCTGG 000720 000721 CATGGCACCT ATGCTGGGGT CAGACCCTCA ACCAGCCCTT CAGTGTTGAA ATGCACAACC TCAGCCCTCT AGCCTCAGCG 000800 000801 GAGGAAGCAG GGCTCTTCAG TTTGGGAGAA CCATATACAA CCAGAAGAAG GGGCCAAAAT ATCTGAAGCC CCCAGGTAGC 000880 000881 GGGGCTAAAA GAAAGGGATA AATGGCCTCT TCTGGTTTTT TTTCTTTGTT TGTTTTTGTT TTTACTGGAA ACAACTCTAA 000960 000961 GGGGAGACTG GTCCCAGTGA AGATGATCCC CTGAAAGGCT AGTAAGCAGG TCACCTTTGA ATGTCAAGGG CAAAATCACT 001040 001041 GTTGGTGTCC TGTTCTCCCT CCAGGAGCTG GCTCCTCCAC AGCTCTCAGG AATGACAGTA AACACAGACG GCCCTGCATG 001120 001121 TATTCCGGCT GTGGCAGCCT TCCTCCTGGG CTGCACATCA GGCTAACAAG CCCAGCCCTC AGCTTCACAG GGATTGGAGA 001200 001201 GCTGGTGACC CTAGTCAAGG AAGCTGGTGA CCCTGGATCA GTTGCCTCCC CTCTCTGTGC CTAAATCCCC CACCCCACTT 001280 001281 CTGTCAATTA GGAGGATGAT GCCTTCTTCA AAGTGTTGTC ATAAAGATTA AATCCTTATT AAAGTCT |
Predicted Small Protein
Name | ENST00000520576.1_smProtein_710:865 |
Length | 52 |
Molecular weight | 5730.4309 |
Aromaticity | 0.0980392156863 |
Instability index | 86.4803921569 |
Isoelectric point | 5.99884033203 |
Runs | 9 |
Runs residual | 0.0222286934576 |
Runs probability | 0.044367897309 |
Amino acid sequence | MALAWHLCWGQTLNQPFSVEMHNLSPLASAEEAGLFSLGEPYTTRRRGQNI |
Secondary structure | LHHHHHHHHHLLLLLLLEEEELLLLHHHLHHHHLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |