ENST00000521936.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000521936.1

Source

Gencode19

Same with

lnc-CNBD1-4:6,NONHSAT127602

Classification

intergenic

Length

1469 nt

Genomic location

chr8+:89712520..89749363

Exon number

2

Exons

89712520..89712578,89747954..89749363

Genome context

Sequence
000001 GTTCCCCTTG CTGCTGCCAT GTGAAGAAGG ACATGTTTGC TTCCCCTTCT GCCATCATTA CGGAGTCTCA CTCTGTTGCC 000080
000081 CAGGATGGAG TGCAGCGGCG AGATCTCGGC TCACTGCAAG CTCTGCCTCC CGGGTTCACG CCATTCTCCT GCCTCAGCCT 000160
000161 TCTGAGTAGC TGGGACTACA GGCGCCCGCC ACCACGCCCG GCTAATTTTA TGTATTTTTA GTAGAGACAG GGTTTCACCA 000240
000241 TCTCTATCTC CTGACCTCTT GATCTGCCCG CCTCCGCCTC CCAAAGTGCT GGGATTACAG GCGTGAGCCA CAGCGCCCGG 000320
000321 CCCAAAAATC CATTCTTAAT GGCTTTCTCT TCTGATGCAA AATCCTGATT GCCTTCAAAT ATTACTATTA GATAGAAATC 000400
000401 TCCCCACCTT TAGCTGAAAG AGATAAGGAG GTTTTGCACT GAGGAAACAA ACAAACAAAC AAGCAAACAA CATTCATCAA 000480
000481 TTTTTAAAAA AAGTATGTAT TGAACTATAG TCAGGTTCAA TGAGGAAATG CATTACATTG TCACTAAACT GGCCTTAGTT 000560
000561 GGAGAAAGAA CACTGGCAGA TTAATTAAAG TTATTAGCGC TTATGGTAGG AAACTGCATG ATATATGTGA AAGATCTTTT 000640
000641 AGGGACTGGA AACACAGTGT AAATTCAAAC TCCTCCCAAA ACTTTAACAA GGCTGGATGA AATGAAAGGA ATACTGTGAT 000720
000721 TTCTACAATT GACAACAGTG TCAGGCATGC AGGAAACAAA CAAAACCTTT TGATGAAGGA AAAGTAACTT CTGGACAAAG 000800
000801 TATAATTGGT TACAGGTAAA CAGATATGTC ATCCAGGCAG ATATGACAGT TTATAGGAAA AATATAATGT TATGATCTAA 000880
000881 AAAATGCAAG CCACAAACCT ATTGCCTGGG CAATAATTAG CCTGAAGTTG GGCTACTAAG GAGCTGGCTA AGCAGCAGTG 000960
000961 ATAACACCAG ATACTGGAAG AAACTTCTGT GATCAGAAAC CAATACAACT AGTGAACAAT TCACAGTATT TCTAAATCCG 001040
001041 GGCACCAAGG AAGTTGTTTG GTTAGTCATG ATGGAAGCCA GGAACAAATA GATCTCAAAT GTGTGATAAT AATTATCAAG 001120
001121 CGGAATGTCT AGAATATTAT AGTGAGTGCC AAGATTTCCA TCTAAGACAT TACCAACATA GCAACTGAGG CATGAATTAC 001200
001201 AGGTTTTACA CAAAAAAAGC ATTATAAGAA TAATACATAT AATATATTAA CAGTTCAAAA GTGAAACAAA CATTTATGAA 001280
001281 TGGGCTACTC AGATTTAAAA TAAAATATTG CCTGTTCATT GAATGCTTTC TGGATTTTAC TTTCTAATTG TATACCTCTC 001360
001361 TTTCTTTCTT AAGATAACTA CTATCATATA TTTGTTTTGG ACTGCATGTT AATAAAATTA TATAATATGT ATTTTATTAA 001440
001441 CTTCATAATA AAAATACTTT TTAAAATAA
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Predicted Small Protein

Name ENST00000521936.1_smProtein_32:220
Length 63
Molecular weight 6915.801
Aromaticity 0.129032258065
Instability index 86.8612903226
Isoelectric point 7.97735595703
Runs 7
Runs residual 0.0407373271889
Runs probability 0.0263330557448
Amino acid sequence MFASPSAIITESHSVAQDGVQRRDLGSLQALPPGFTPFSCLSLLSSWDYRRPPPRPANFM
YF
Secondary structure LLLLLLEEEELLLLLLLLLLEELLLLLLLLLLLLLLLHHHHLLLLLLLLLLLLLLLLLLL
LL
PRMN -
PiMo -