ENST00000521936.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000521936.1 |
Source |
Gencode19 |
Same with |
lnc-CNBD1-4:6,NONHSAT127602 |
Classification |
intergenic |
Length |
1469 nt |
Genomic location |
chr8+:89712520..89749363 |
Exon number |
2 |
Exons |
89712520..89712578,89747954..89749363 |
Genome context |
|
Sequence |
000001 GTTCCCCTTG CTGCTGCCAT GTGAAGAAGG ACATGTTTGC TTCCCCTTCT GCCATCATTA CGGAGTCTCA CTCTGTTGCC 000080
000081 CAGGATGGAG TGCAGCGGCG AGATCTCGGC TCACTGCAAG CTCTGCCTCC CGGGTTCACG CCATTCTCCT GCCTCAGCCT 000160 000161 TCTGAGTAGC TGGGACTACA GGCGCCCGCC ACCACGCCCG GCTAATTTTA TGTATTTTTA GTAGAGACAG GGTTTCACCA 000240 000241 TCTCTATCTC CTGACCTCTT GATCTGCCCG CCTCCGCCTC CCAAAGTGCT GGGATTACAG GCGTGAGCCA CAGCGCCCGG 000320 000321 CCCAAAAATC CATTCTTAAT GGCTTTCTCT TCTGATGCAA AATCCTGATT GCCTTCAAAT ATTACTATTA GATAGAAATC 000400 000401 TCCCCACCTT TAGCTGAAAG AGATAAGGAG GTTTTGCACT GAGGAAACAA ACAAACAAAC AAGCAAACAA CATTCATCAA 000480 000481 TTTTTAAAAA AAGTATGTAT TGAACTATAG TCAGGTTCAA TGAGGAAATG CATTACATTG TCACTAAACT GGCCTTAGTT 000560 000561 GGAGAAAGAA CACTGGCAGA TTAATTAAAG TTATTAGCGC TTATGGTAGG AAACTGCATG ATATATGTGA AAGATCTTTT 000640 000641 AGGGACTGGA AACACAGTGT AAATTCAAAC TCCTCCCAAA ACTTTAACAA GGCTGGATGA AATGAAAGGA ATACTGTGAT 000720 000721 TTCTACAATT GACAACAGTG TCAGGCATGC AGGAAACAAA CAAAACCTTT TGATGAAGGA AAAGTAACTT CTGGACAAAG 000800 000801 TATAATTGGT TACAGGTAAA CAGATATGTC ATCCAGGCAG ATATGACAGT TTATAGGAAA AATATAATGT TATGATCTAA 000880 000881 AAAATGCAAG CCACAAACCT ATTGCCTGGG CAATAATTAG CCTGAAGTTG GGCTACTAAG GAGCTGGCTA AGCAGCAGTG 000960 000961 ATAACACCAG ATACTGGAAG AAACTTCTGT GATCAGAAAC CAATACAACT AGTGAACAAT TCACAGTATT TCTAAATCCG 001040 001041 GGCACCAAGG AAGTTGTTTG GTTAGTCATG ATGGAAGCCA GGAACAAATA GATCTCAAAT GTGTGATAAT AATTATCAAG 001120 001121 CGGAATGTCT AGAATATTAT AGTGAGTGCC AAGATTTCCA TCTAAGACAT TACCAACATA GCAACTGAGG CATGAATTAC 001200 001201 AGGTTTTACA CAAAAAAAGC ATTATAAGAA TAATACATAT AATATATTAA CAGTTCAAAA GTGAAACAAA CATTTATGAA 001280 001281 TGGGCTACTC AGATTTAAAA TAAAATATTG CCTGTTCATT GAATGCTTTC TGGATTTTAC TTTCTAATTG TATACCTCTC 001360 001361 TTTCTTTCTT AAGATAACTA CTATCATATA TTTGTTTTGG ACTGCATGTT AATAAAATTA TATAATATGT ATTTTATTAA 001440 001441 CTTCATAATA AAAATACTTT TTAAAATAA |
Predicted Small Protein
Name | ENST00000521936.1_smProtein_32:220 |
Length | 63 |
Molecular weight | 6915.801 |
Aromaticity | 0.129032258065 |
Instability index | 86.8612903226 |
Isoelectric point | 7.97735595703 |
Runs | 7 |
Runs residual | 0.0407373271889 |
Runs probability | 0.0263330557448 |
Amino acid sequence | MFASPSAIITESHSVAQDGVQRRDLGSLQALPPGFTPFSCLSLLSSWDYRRPPPRPANFM YF |
Secondary structure | LLLLLLEEEELLLLLLLLLLEELLLLLLLLLLLLLLLHHHHLLLLLLLLLLLLLLLLLLL LL |
PRMN | - |
PiMo | - |