ENST00000522622.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000522622.1 |
Source |
Gencode19 |
Same with |
lnc-FAM110B-7:1 |
Classification |
intergenic |
Length |
2971 nt |
Genomic location |
chr8+:58173785..58179172 |
Exon number |
3 |
Exons |
58173785..58173898,58174093..58175676,58177900..58179172 |
Genome context |
|
Sequence |
000001 ATTACCTTCC GAGGTGCCAG TGCGCGCTGG GGCCCAATGG CTCTGCTCCG TATATTTCTT CTCCGAGAGT TTGGAGACGT 000080
000081 CCCTCTCAGA GAAGCTGGAG GGTCCCTGTC TGAGACCCCA GATGAGGATC TGGAATATCC ACAAAGCTGC GTCCAGGGGA 000160 000161 ACGCGTGGAA GCTGCAGCGG AGCCTCCTGC TCAAGAGAAA AGGCCAGTCT GAAACCTACA AGAAGAACAT GTGTCGGGAA 000240 000241 CTGCGGGCTG TGGGCTGGGG GCTACTGGAG GAGGTGGGCA GGTGGGGAGA AGCACCCCCT TCAGAGCTGG GGGCTTGGGG 000320 000321 AGTGGGGGCG AGGGGAGGCT TGGAAAGAAT GGAGTGTGTG GGGCGGGCCG TCCTGGTCCC CAGGGCGCTG GGCTTTCTTC 000400 000401 CCTGGCAGAC TCCGCAGCGC CTGAGATGTG GACGCCTTGG AGGCGGAGGG CCCAAGTCAT CTTTATGAGC AGCAAAAGAA 000480 000481 ACCCAAAACT TTAGCTGGTT TCTCCACCCA CAGTTCCTCT TACAGAGCAC TTCAGAGAGA ATTTTAAAGC GGTATAACAA 000560 000561 AATTAAGTAT ATACTGTGTT TTATTTTTAA TGTACACATT TTAAAAGATA ATATTAGATA CATTATAGAA AGGAACGTAA 000640 000641 TGAAAGAAAT AATTCCCATA ATATATCACC TTCTGGGCTA AAAATTCTTT GGCTAAAATC CAATATTTAT TTTATATTAA 000720 000721 TGAATGCCTA CATAAATATG TTCTTTACTG AGGGAGCTTA GAAGGACACT TTGAAGTGGG AAGATGGTTC ATGTTCTTGA 000800 000801 ATAAGAAGAC TCATTTTTCT CAAGATGTGA GCTCTTTATC AATTTTACAT AAACCAAATA AAGCTATCAA AATTTTTAAC 000880 000881 GTTTTTGAAT TACACATGCT TTCACTATTG TGATGACATT AAGAAAATTT TTGTAACGGT TAAAAAAGTC TTACCTTTCT 000960 000961 AGATATCAAA TGTGCTATTG ATTTCCACAA ATAGTTTGCT AACAGCTGAA AAGATAGATA AATGAATACA AGAGAATAGA 001040 001041 AAATCCAGGG ACACTCAAAT ATATGTAAGA ATTCAGAACT TGATAATGGT GATACTTTGT ACTAGTAGGA AAAGATGAAT 001120 001121 TATTTTCATT AATGAAAGGC CTGCTTTTTG GAGGAAACTA GCTAGATTTT TATGCCACAA AAATAAGTTC CTCATACAAT 001200 001201 ATAGACTGAA AATTTTAAAT ATGTAAGATG AGAGAAACAT CAGAAGAAAA CACAAATGCC TTATTTATAC AGAAGCATTT 001280 001281 TTGTGTTGAC AAAAACCTGT CTAAGAAGCT CACAAGCAAG CCTTCTGAAG GTTGATCTAG CAAAATAAAA TTAAATCACC 001360 001361 CTATAATAAC AAAAAATAAC AAAACATAAG GTAACATAAA ATATTTACCA TATGTGTATA CATATTAGAT TAAATATGGA 001440 001441 TTTTCATTTT ACAGAGAATT ATTTCAAATC AGCCTGAAAC AAAAAAGACT CTAATTTAAC ATTGAGCAAA GCAGTTCTTT 001520 001521 CAGATCTGCA AGTGACCTAT GCTCATAGGA AAAAATATTT TGTGTTCTTG GTAAGAGAAG GAATTTAAAA GAGGTATAAA 001600 001601 ATATTGTTTT CTGTCCACAA ATTTTGTGAA GATGAAAAAC AGTGATATTA TACTGCTGCT TAAAGTTGCT GATGGCCTTT 001680 001681 CAAATGGACA ATTTGGTGCT CTGATGGCTG GGAAGTCCAA GGTTACAGGG CTTATCTGGT GAGGATCTTT TCCCTGGTGG 001760 001761 GGACTCTACA GAGTCTCAGG GTAGTGCTGG GTATTACTTG GTGGTGGCCT CACAAGAGAC AACCAGGAAT GAATTAATCC 001840 001841 ATTCATAAGG GCTTGGCCTC CCAAAGGTTC TACCTCTCAA AAGTTCTCCC TCTCAAAGTT TCTACTAGTC ACTTCCCAAA 001920 001921 GGTTCTACCA GTCACTTCGC AAAGGTTCTA CCTCTCAACA CTGCTACCTT GGGGGACAAA GTTTTCAACA CATGAACTTT 002000 002001 TGGGGAACAC ATTCAAACCA TATCACCACT TTAGCTGTCT TGGCTACTAT CTGCACCTTT TATGTTCAAC CCATGTATAT 002080 002081 CTTTGAATCT ATTGTGTGTC TCTTATAAAT AATATATATA GTTGGATCAC ATTTTTCTTA TCAGTCTGAC AATCTCTGCC 002160 002161 TTTTGATTGT ATTGTTTAAT CCATTCACAT TTAATGTTAC TATGATATGC TTGGATTTAC TTCTATTTTC CTTTTTATTT 002240 002241 TTAACGTTTC ATGTATTTTT TAATTCTTTT ATTCCTTCTT TACTGCTTTT TCATCAAGTG AATATTTAAA AAGTTAACGA 002320 002321 AACTCAAAGA TTCTTGTACT TAGGAGAATG GATGTTTTTA TACTTTTTTG GTAAACGTAC ATCACATATA ATACTACCTT 002400 002401 CCTGGCCTAC TTCACAGAAT GATGTGGAAA TCAGTGAGAC AGTATGAGAC AGAGACTGAG AAACCACAAA GTATTGTTTC 002480 002481 TAATTAAGTA CTGGAGCAAT GTTTAAAAAT CAGTGTGAGA TGGGCATGGT AGCTTACGCC TGTAATCCCA GCACTTTGAG 002560 002561 AGGCTGAAGA GGGTGGATCA TGAGGTGAGG TCAAGAGATC GAGACCAGCC TGGCCAACAT AGTAAAACCT CATCTCTACT 002640 002641 AAAAATACAA AAATTAGGCA TGGTGGTGCA CGCCTGTAGT CCCAGCTACT TGGGAGGCTG AGGCAGAAGA ATCGCTTGAA 002720 002721 CCTGGGAGGT GGAGGTTGTG GTGAGGCGAG ATAGTGCCAC TGCACTTCAG CTTGGGCAAC AGAGTGATAC TCCATCTCAA 002800 002801 AAAAAAAATT AGGGTGAAAT TAAGTAGTAG TGTTTTACAA AAAATGAATT TTGAAAGGGT GTGTGTACGT GTTTAGGTCA 002880 002881 TGCTTTTTTG GGCTAGTTAG TATGAAATCT ATTTACCTAA ATTCTGTAAG ACTACTTAAA ATGTTTATTA AATTTTGAAA 002960 002961 TTCATGTAAC A |
Predicted Small Protein
Name | ENST00000522622.1_smProtein_1991:2107 |
Length | 39 |
Molecular weight | 4379.148 |
Aromaticity | 0.157894736842 |
Instability index | 50.0055263158 |
Isoelectric point | 5.93951416016 |
Runs | 6 |
Runs residual | 0.014716066482 |
Runs probability | 0.0264970853206 |
Amino acid sequence | MNFWGTHSNHITTLAVLATICTFYVQPMYIFESIVCLL |
Secondary structure | LLLLLLLLHHHHHHHHHHHHHHHEELLHHHHHHHHHHL |
PRMN | LLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLL |
PiMo | oooooooooooooTTTTTTTTTTTTTTTTTTTiiiiii |