ENST00000524062.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000524062.1

Source

Gencode19

Same with

lnc-GTF2F2-2:10

Classification

intergenic

Length

2285 nt

Genomic location

chr13+:45915648..45965872

Exon number

8

Exons

45915648..45915749,45918440..45918581,45951196..45951350,45952665..45952806,45953330..45954136,45957226..45957370,45963870..45963955,45965167..45965872

Genome context

Sequence
000001 ACGGGGCCGC CTGGAGAGGT GCTGGGAGCT GGGTGGAGCT TAGAGGAATT AAACTTTGGC CCTGCGCCTC GTCCAGCCTA 000080
000081 GGTTCCACCC TTTTCTGGGA ACAATGAATC TCGCTGTGTT GTCCAGGCTG GAGTGCAGTG GCACCATCTC GGCTCACTGC 000160
000161 AACCTCTGGC TCCCAGGTTC AAGCGATTCT CCTGCCTCAG CCCCCTGAGT AGCTGGGATT ACAGGCACGC GCCACCACTC 000240
000241 CCAGGCTCCG GTAGATTGCA AATGACCTGC TTTCTTTCTG TTCCCGGGCG TTTGGACCCC TGTCTTGGAC CGCTGTCGGA 000320
000321 TAGTAAATCC CAAGTAAGGT ACCTGCCGTC GGCAGATTTG AGCTTTCTTC TTGGACACCT AATACCCAGA GTCCTCCAGG 000400
000401 CTCCGGTAGA TTGCAAATGA CCTGCTTTCT TTCTGTTCCC GGGCGGCATC GGACCCGTCG GAGAGTAAAT CCCAAGTAAG 000480
000481 GTACCTGCCG TTGGCAGATT TGAGCTTTCT TCTTGGACAC CTAATACCCA CAGTCCTCCA GGCTCCGGTA GATTGCAAAT 000560
000561 GACCTGCTTT CTTTCTGTTC CCGGGTGGCA TCGACCCGTC GGAGAGTAAA TCCCAAGTAA GGTACCTGCC GTTGGCAGAT 000640
000641 TTGAGCTTTC TTCTTGGACA CCTAATACCC ACAGTCCTCC AGGTGAGTCC TAAGGATCTT AGGATACGCG ATGGGGGTCC 000720
000721 TAAGGCAGGG GGGGAAGAGG GGATGGCTGT CACCCAACCC AAAATGGGCG GCCTTTATGT TCAGGTTTTG CCCAAGAGTC 000800
000801 AGCTTATTTG CTTCTTGTAC TATCAGGGCA GTTGATGCCA CGGCCCTCAA ACATGAGGGG CCATCCTTTA GAAACCCTCT 000880
000881 CTAGTTGTTT AGACAACTAG GCCACCGGCC TCAGCCAGGG CCCCAGAGTT TCGGTTAAAA GTCCAGCTGC CATCTTTTCT 000960
000961 CTATCTGACG CATTCAATGG AAAAGGCTTT GTCAGATCGG GTAGCCCCAG GGCTGGGGCT GCCAGAAGTT TTTCCTTTAA 001040
001041 CTCCTGAAAG ACTTTTTGTT CTTGGGATCC CCATTCCAAA GGTTCCGTTC CCCGCCCCCT TTGTGACCTC ATACAAAGGC 001120
001121 TTGGCTAATA CTGCAAAGTT TGGGATCCAG TCTACAAAAC CCCACAGCTC CCAAGAATTC CCTTACCTGC CTTCTGCCCT 001200
001201 TAGGCTCCGG TAGATTGTAA ATAACCTGCT TTCTTTCTGT TCCCGGGCTG CGTTCGGACC CCTGTCGGAT AGTAAATCCC 001280
001281 AAGCAAGGTA CCTGCCGTCA GCAGATTTGA GCTTTCTTCT TGGACACCTA ATACCCACAG TCCTCCAGGC TCCGGTAGAT 001360
001361 TGCAAATGAC CTGCTTTCTT TCTGTTCCCG GGCTGCGTTC GGACCCCTGT CGGATAGTAA CTCCCAAGTA AGGTACCTGC 001440
001441 CGTCGGCAGA TTGGAGCTTT CTTCTTGGAG ACCTAATACC CACAGTCCTC CAGAAAAACA AACAAAGACA TGGATTTACT 001520
001521 GTGCATATTA GCAGATCCAT ACTGGAAAAT GCATGGAGGT TTCATATACA CCACTTACAG TTTTCAGCTC CTCAGTAGTG 001600
001601 ACAAAGCCAT ACCCATCATT GTCGATTCGA TCAACAATCT TCCCTAGCCT CTCCTTGCTC TCGTCCGGGG TGAGCTCGTC 001680
001681 GAAGTTCTTG GAGTCCTCCT TGCCCAGGAA GGCCTCGTGG TCGTACTGGA AGCTCTGGTT GTCCTCAGGG GGCCGCTCGC 001760
001761 CCAGCTCCGA GTCGGGCCGC ACCACGCGCT CTTTGCGCAC CGTGGGCTTG GCCCGCAGAA CCCGCGGCGC CAGCACCAGC 001840
001841 GCCAGCAGCA GCCCCAGGGC TAACCCCAGG CGGCCACCGC GCGCCATCGT CCCGAGGAGA GGGCGGCCGG GAGGGAGACG 001920
001921 CTGAGCGAGC GACAACAGCG GCAGCTCGGG AATGGGGGCT CGGAGCGCGG CGGCCAAGTT TTATGTTATG TATATTTTAC 002000
002001 AAGTAAAAAA ATTTTTTCAC CTCAGCCTGA ACTGAACACT AGCTGACAGA CGTTTTGATT TCTTTGACCA TCACGGAATC 002080
002081 GTGGCCAAGC GCGGTGGCTC ACATCTGTAA TCCCAACACT TTGGGAGGTC AAGATGGGCG GATTGCTTGA ATCCAGGTGT 002160
002161 TTGAGATCAG CCTGGGCAAC ATGACAAAAC CCTGTTTCTA GTAAAAATAC AAAAATTAAC CAGGCTCAAG CCATGACCAT 002240
002241 GCACCATTGC ACTCCAGCCT AGGCGACAGA GCAGGACCCT GTCTC
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Predicted Small Protein

Name ENST00000524062.1_smProtein_710:883
Length 58
Molecular weight 6378.4436
Aromaticity 0.122807017544
Instability index 44.7912280702
Isoelectric point 11.3666381836
Runs 8
Runs residual 0.0135964912281
Runs probability 0.0502892598481
Amino acid sequence MGVLRQGGKRGWLSPNPKWAAFMFRFCPRVSLFASCTIRAVDATALKHEGPSFRNPL
Secondary structure LLEELLLLLLLLLLLLHHHHHHHHHHLLLLLEEEEEEEEEEHHHHHHLLLLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooooooo