ENST00000533812.2
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000533812.2 |
Source |
Gencode19 |
Same with |
NONHSAT025146 |
Classification |
intergenic |
Length |
2203 nt |
Genomic location |
chr11-:130714086..130735456 |
Exon number |
7 |
Exons |
130714086..130714931,130716022..130716086,130716758..130716937,130724622..130724787,130731671..130731723,130731861..130732661,130735365..130735456 |
Genome context |
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Sequence |
000001 GCACGGCTGA GAATGCAGTC CTGGGCATAT TCCACATCCA CAGTTCTCAG TGGACACAGG GTCTGATGCC CGAGGCTCCA 000080
000081 AGCCGTGCTC CAGGAAGTGT ATTTCAAGTT GAGCTCACGT TCCCAAGATG CTGAGATTCT TATGTAGCTG ACACCGGAGC 000160 000161 TGAGGCTGAG CCCCAGCCAG GGATATCCAA CGATTGCCAG TAACACCACG GAACTGAGTG AAGATTCAGG GGCTGAGTGT 000240 000241 GTTCCTGAGT GCTTCAAACC GGGGGACCTG GAAACCAGAG GACTCCTGGG GAAAGGCTGT CAACTCCAGC CTGCTCTTCC 000320 000321 TAAATGGCCT TGTTAGTAGT GACTTCAGCC CTGGCGGTGA GGCATGTGGG TCAGAATAAC ATTCCCTTTC TTTTCCCTTC 000400 000401 ACCTCTTTTT TCTCCACGGT TCCTTTTCAT AACTTCTTTA TTTGCTGCCT AGAGGAGCTT TCTGGACATT TTGTCTCCAG 000480 000481 GGAGCGTGAC ATGTCACCTG TTTCTCACCT CATATGCCTC TGATCTTCTA CACCAAGGTA GCTATAAAGG CTTGCTTTCT 000560 000561 AGGCTGGGTT TCCCTGCACA GGCCCACTGA ACCACTCAAA CCTCAGAGGT GGAAGTGCCC AGCGGGCCTC ATGGTCAGCT 000640 000641 GGGGATAACG GAGTCATTTT CGCAGCCCAA CTTCTGAAAT TCCACAAGAG GGCGCCCAAG GTCTCCCAAG TCCGGCCACG 000720 000721 CCCGGTGGCC TTGAGGCCGG AAGGTGGCGC TGTTGCTTTA GCCATCAAGA AAGGCAAGGC TGGGGACGCC GCATCCCCGG 000800 000801 GTGCGGAGGG CGATGCCTAG GGGCGATGCT GTGCCTGTGG CGGCCAAACA GTGCCACCCA CTCCGGGAAA CAAAGCCAAG 000880 000881 CGCCGGACGC TAGCTTCCTA GGTCTTCCAC GTGTTCAACG GAAATTCACA AATTCTCTAG TAGCAGAAGC CAAGAACAAG 000960 000961 TTCTCTGGAT CACATAGGCT CCTCTGCTGC TTCCTCAGAA ACAGAGATGG TACTTGGTGC CGAAGAAAGA GACAGAGACT 001040 001041 GGGAAGGAGA AGGAAGTCAG CAGAAAGAAG AAAGACGCAC AGGAAAGAGA GAAGGGTAGC TAAAAGAAAG AGTCAGGGAG 001120 001121 ATGGTTCCAG GAGAAGAAAA GAAAGTCAGT TGCTTTCTGA GATCAGGTGG GAAGTTTATC CTGTCAACTC CACCTTTAGA 001200 001201 GTGCTAGTCT CTGGAGCCAC AAGGACTGAA ACTCTGCTTC AGAGACCCAC CACTGATGAC AACCATCAGG CTCAGGAACT 001280 001281 GAAAAGAAAT GGTGCAAATG TGGCCGAGGG ACTTGGGTTT TACATTTATT GCCGAGTCTG GTTTTCTTGA GTTTCAGATG 001360 001361 ATAAAATTGA AGCCCAGAGA AGCTTGGGAG CCTCAACTAT TAATGGAAAA ACCATAACTA GAACTGAGTT TTCCTGAGAC 001440 001441 ATTTTTTACT ATTCATTCCC CTGCTCTTGG GCCACTCCAG GGCACTGAGC ACACTTGCTT TGGCTATTTG GAGAAGAGGC 001520 001521 CAATAGACAC AACTGGCTTC ATCTTCAGGG ACACCCAATA TCTGGCAGCC CTCAGCCCCA GCGGAGTCTT TATTGAAAGA 001600 001601 ACTGATTCAT AGACCAGGCG CGGTGGCTCA CGCCTATAAT CCCAACACTT TGGGAAGCTG AGGTGGGCGG ATCTCAGTCA 001680 001681 GGAGATCGAG ACCATCCTGG CTAACACGGT GAAACCCCAT CTCTACTAAA AATACAAAAA TAAAAAAAAA AAATAGCTGG 001760 001761 GTGTGGTGGC AGGCGCCTGT AGTCCCAGCA CTTTGGGAGG CCGAGGTGGG CAGATCACAA GGTCAGGAGT TCAAGACCAG 001840 001841 CCTGACCAAC ATGGTGAAAC CCCATCTCTA CTAAAAAAAT ACAAAAATTA GCTGGGTGTG GTGGTGCGCA CCTGTAATCC 001920 001921 CAGCCACTCA GAAGGCTGAG GCAGGAGAAT TGCTTGAACC TAGGAGGGGA AGGTTGCAGT GAGCCGAGAT TGCGCCACTG 002000 002001 CACTCCAGCC TGGTTGACAG AGCAAGACTC TGTCTCAAGA AAAAAAAAAA GAAAAAGAAA AAAAAAGAAA GAAAGAACTG 002080 002081 ATTTATGAAA AGATTCTTAT CATGATTTTC ATTTTACTAG TCCAAAGATC ACTGAGTTAA ACTGCCTATT TTAGTAGATG 002160 002161 AACAAAAGTG CCTTGAATAA AGACGTAATT CAATAAAAAC TTA |
Predicted Small Protein
Name | ENST00000533812.2_smProtein_323:451 |
Length | 43 |
Molecular weight | 4604.4602 |
Aromaticity | 0.142857142857 |
Instability index | 55.9047619048 |
Isoelectric point | 12.0000610352 |
Runs | 6 |
Runs residual | 0.0333031946956 |
Runs probability | 0.0331949596656 |
Amino acid sequence | MALLVVTSALAVRHVGQNNIPFLFPSPLFSPRFLFITSLFAA |
Secondary structure | LEEEHHHHHHHHHHHLLLLLLLLLLLLLLLLLHHHHHHHHLL |
PRMN | HHHHHHHHHHHHHHHHHHLLLLLHHHHHHHHHHHHHHHHHHL |
PiMo | TTTTTTTTTTTTTTTTTToooooTTTTTTTTTTTTTTTTTTi |