ENST00000535544.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000535544.1

Source

Gencode19

Same with

lnc-TMEM132B-11:5,NONHSAT031824

Classification

intergenic

Length

2815 nt

Genomic location

chr12+:127226211..127230798

Exon number

3

Exons

127226211..127226801,127227286..127228026,127229316..127230798

Genome context

Sequence
000001 TGGGAATTCC CTCTATGGGA AAGTCATGGT GGTATCGACT GTAGATTGGC AGATGACAGA GGGCCTCTTT GAGGGGGTGC 000080
000081 CAGATGGCTG AGGATGCCTG ACCAGGGGCT GACATCTCTG CACACATCCT GGTGGAGAGG TTTCCAGGCT GAGCAAGGAG 000160
000161 CCAGTAACAG CCATGAAGAC AGCACAGAGG AAGCTGTGTC AAAAAATCAG AAACCGATAT TTCAGACAAG CCTGGTTACA 000240
000241 AAATTATGAG GAACCTTTGG CCCTTTCCTT CACCCTAAGC AGTGACATCA ACACCATCAC CCCGGATGAA TATCAGTTTA 000320
000321 CTTACCGAGG CTCCTTCAAG CTCTTGGCAG GCAAGACCAT GGACCCAAGA GGGTATGTAA CTGTGTATTG TCAGCGACTC 000400
000401 CACACGGCTA CATTTCGGTA TTTAATGAGG CATTGATCTT GCTGGAGATT TTTGAAAGTC TGGCCAGCTG GCCCATTGGA 000480
000481 AGGAGACCTG AGCTTGGTTC TCTGTGCCTG AGTCGTTGGC TGTCTATGCT ACAGGAACTG CCTCAGCTGT GGAAATGCCA 000560
000561 TGAATCCTTT TCCCCGTTGG CCATGCAGCA GGACATACTT TATTCAGCTG GGTGCTGAAA AAGAATCTTG GAAATTAGGA 000640
000641 AACTGAATGA GGCCTCATTT CACACTCAGA ATGTGGGTTG CAATAGTCAC TTCCTCTGCT GCTGGGAAAG AAAGAATTAT 000720
000721 ACTACCTTTT GAATTTTGGA TTAAGGAGAG AGGTGTTGGC TTGTCAAACT ACCATGTATT CCTCAAGACA TATTTTTGTG 000800
000801 GCTTTATAAA ATTCAATATA TATGTCTAAA TTCAAAAATA TTTTGTTGCA ATCTGGCCCT TGGACAAACT GAGGCCCTAG 000880
000881 CAACTGATGT TTATGGCTTT CCGTAGAACC TTTCAGATAA AATTTACACA GCATTTTACT GCAGCTATTT CACACAAAGC 000960
000961 AGAGGATTTT GCCACAAAAC TGAAAGAAAA AAGAAACTGC ATTCTTAAAT TTTTCATAAA TCAAAAGGTA TAAAAATATC 001040
001041 TACCTAAACG ATAAAGGAGA TGAGAAACCC CACCCATGAT GGGAAGAAAG CCTATTTCAG TTTTGCCTTT ACTTCAAGTT 001120
001121 CTTTTTTCCA TATCTGGAAT GCAATCAGAA TTTTAATCTT GCCTTGGGTT CCTCCTGGAT TTGGGGAGAA GACAAAACCT 001200
001201 GAAAATCTCT AATCTGCATG TGTTCAGCTG CGTATCTTCT GGATACGGAA GGATCACACT GCACAGAGTG CTGGACTTGC 001280
001281 AGGAGCCCCG CTTCTCAACC TCCATCGCTT TATGAATGAA TTCACCAGAA AGAAAAGGAA GAATCAACAC TTTCAGAGAT 001360
001361 GGAGCCTGTT GAGCCACAGT ACCAACTAGT CAATGCTGAA TCGACTTCTC CCTTTCTACA TTGCCTGAGA GAAGTCATTG 001440
001441 GGGAATACTC TGTACACGAA TTTTCACTGT TGGGGAAAAC AGGTATTGGA AGTGATGGGT AGACCTCAGT TTGTATGCAT 001520
001521 TGTGTTAATT ACTATTTCTT TGCTTTTCCT TTTTTTGTGC GGTTGCAGAG AGTCAAGGGA TTGGATTGTG GATTGCATTG 001600
001601 GTGGTTTTCC TCAGTTTCCT CATCTTCTCC ACAAGTTTCT ACATATCGAA TGCAGAGCAG CCCTTCTTCA AAGGACCTCC 001680
001681 TACGGAAGCT GCTAAGGAAC TCAGTCTGTA GCTCTGCGTG GAGCCATGTG TAAACACTGA ACTGAGACCT GCCACCTCCT 001760
001761 ACTACCTAAG GGCCCATTTT CATCTGATAT CATCCCCCAG AAACAAACTC ATGATGACTT CCATGTTTTT TTTAGATTAG 001840
001841 ATACATGGAG AATTTTCCTT TCCCTTAGAA TTAAAATCCT GCATTCTAAT TTTCAGTAAG CTTTTTTATT TCTGAATAAT 001920
001921 TTTAAATTTA AAGAGAAGTT GCAAAGATAG TATAGAATGT TCCCTTATAC CTGTTTTTAT TTAGAGTGAT GTTCCCAGGA 002000
002001 GAAATGATAA TGCAGCAATG GACAAGAACA GGAACAAGAG ACAGTCTTAC CATCTTCTTA CAATTTATAG ATGGGACAGT 002080
002081 GGAAAGAGAA GCCACATCGG GGTTGGGCAT GCAGAGACCT GGTCCTAAAT CTGTGTGACT TTTGCGAAAT CCTTTTGCCT 002160
002161 CACAGAGCTC TAGGTTCTTA TCTGTCAAAC AGGAACCAGA CCATCAGATC CGTAGAGATC CAACCAATGA AGGAGACTTC 002240
002241 GAAAACTTCA CATTGCCGTG TCAATGTGAG GTTGCTGGAT GGTTATGACA AGAAATCACA TTAAATTCAC TGGGGTAACA 002320
002321 TTGTTCATGA AACGGGATAA TGTGTTTCAG CGATGAACCA CCCATGGCCT TACTACAGAC ATATTTCCAC TTTGAAAATG 002400
002401 TGTGTGAGTG TACATGTCTG TGTGTGAGGC AGAGATTAGA AAGTGTAAAT GTGTGCGTTT TCATTTTACA CATCTTACAT 002480
002481 TTTCCTTTAA TTTGTTTGAA AGCCTGTTTT GTTTGTGGCT TCCATTCCTG GAAGTCCCAT GAGTTGTTAG TGGTGAAGAT 002560
002561 GGAACAGATG TGTCCAACCC GGGGGACTCC TGCCCTCAGG GACTGAGCAG CTGCAAACCT CTCTCTCATC TGATTCCACT 002640
002641 GTTTCTTCCA CATGTACACA TCATGAGAAA TATTGTTCAA TCAATATCTT CCCTTAAATC AACTCATATG CTTATTTACA 002720
002721 TGAATTTACC TAAAACAGAA ACTTGATATC ACTTCTGTAA ATGAAAAAAT TAAACTTTCT GGCTTTAAAT AAAGCATAAC 002800
002801 AATAATAATC ATGTC
[back to top]

Predicted Small Protein

Name ENST00000535544.1_smProtein_2339:2605
Length 89
Molecular weight 10209.1273
Aromaticity 0.102272727273
Instability index 57.6852272727
Isoelectric point 6.48455810547
Runs 14
Runs residual 0.0277272727273
Runs probability 0.0528427587251
Amino acid sequence MCFSDEPPMALLQTYFHFENVCECTCLCVRQRLESVNVCVFILHILHFPLICLKACFVCG
FHSWKSHELLVVKMEQMCPTRGTPALRD
Secondary structure LLLLLLLHHHHHHHHHHHHLLLLEEEEEEEEEEELLLEEEEHHHHHLLLHHHHHHEEEEL
LLLLLLLEEEEEEHHHLLLLLLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHH
HHLLLLLLLLLLLLLLLLLLLLLLLLLL
PiMo oooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTT
TTiiiiiiiiiiiiiiiiiiiiiiiiii