ENST00000535544.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000535544.1 |
Source |
Gencode19 |
Same with |
lnc-TMEM132B-11:5,NONHSAT031824 |
Classification |
intergenic |
Length |
2815 nt |
Genomic location |
chr12+:127226211..127230798 |
Exon number |
3 |
Exons |
127226211..127226801,127227286..127228026,127229316..127230798 |
Genome context |
|
Sequence |
000001 TGGGAATTCC CTCTATGGGA AAGTCATGGT GGTATCGACT GTAGATTGGC AGATGACAGA GGGCCTCTTT GAGGGGGTGC 000080
000081 CAGATGGCTG AGGATGCCTG ACCAGGGGCT GACATCTCTG CACACATCCT GGTGGAGAGG TTTCCAGGCT GAGCAAGGAG 000160 000161 CCAGTAACAG CCATGAAGAC AGCACAGAGG AAGCTGTGTC AAAAAATCAG AAACCGATAT TTCAGACAAG CCTGGTTACA 000240 000241 AAATTATGAG GAACCTTTGG CCCTTTCCTT CACCCTAAGC AGTGACATCA ACACCATCAC CCCGGATGAA TATCAGTTTA 000320 000321 CTTACCGAGG CTCCTTCAAG CTCTTGGCAG GCAAGACCAT GGACCCAAGA GGGTATGTAA CTGTGTATTG TCAGCGACTC 000400 000401 CACACGGCTA CATTTCGGTA TTTAATGAGG CATTGATCTT GCTGGAGATT TTTGAAAGTC TGGCCAGCTG GCCCATTGGA 000480 000481 AGGAGACCTG AGCTTGGTTC TCTGTGCCTG AGTCGTTGGC TGTCTATGCT ACAGGAACTG CCTCAGCTGT GGAAATGCCA 000560 000561 TGAATCCTTT TCCCCGTTGG CCATGCAGCA GGACATACTT TATTCAGCTG GGTGCTGAAA AAGAATCTTG GAAATTAGGA 000640 000641 AACTGAATGA GGCCTCATTT CACACTCAGA ATGTGGGTTG CAATAGTCAC TTCCTCTGCT GCTGGGAAAG AAAGAATTAT 000720 000721 ACTACCTTTT GAATTTTGGA TTAAGGAGAG AGGTGTTGGC TTGTCAAACT ACCATGTATT CCTCAAGACA TATTTTTGTG 000800 000801 GCTTTATAAA ATTCAATATA TATGTCTAAA TTCAAAAATA TTTTGTTGCA ATCTGGCCCT TGGACAAACT GAGGCCCTAG 000880 000881 CAACTGATGT TTATGGCTTT CCGTAGAACC TTTCAGATAA AATTTACACA GCATTTTACT GCAGCTATTT CACACAAAGC 000960 000961 AGAGGATTTT GCCACAAAAC TGAAAGAAAA AAGAAACTGC ATTCTTAAAT TTTTCATAAA TCAAAAGGTA TAAAAATATC 001040 001041 TACCTAAACG ATAAAGGAGA TGAGAAACCC CACCCATGAT GGGAAGAAAG CCTATTTCAG TTTTGCCTTT ACTTCAAGTT 001120 001121 CTTTTTTCCA TATCTGGAAT GCAATCAGAA TTTTAATCTT GCCTTGGGTT CCTCCTGGAT TTGGGGAGAA GACAAAACCT 001200 001201 GAAAATCTCT AATCTGCATG TGTTCAGCTG CGTATCTTCT GGATACGGAA GGATCACACT GCACAGAGTG CTGGACTTGC 001280 001281 AGGAGCCCCG CTTCTCAACC TCCATCGCTT TATGAATGAA TTCACCAGAA AGAAAAGGAA GAATCAACAC TTTCAGAGAT 001360 001361 GGAGCCTGTT GAGCCACAGT ACCAACTAGT CAATGCTGAA TCGACTTCTC CCTTTCTACA TTGCCTGAGA GAAGTCATTG 001440 001441 GGGAATACTC TGTACACGAA TTTTCACTGT TGGGGAAAAC AGGTATTGGA AGTGATGGGT AGACCTCAGT TTGTATGCAT 001520 001521 TGTGTTAATT ACTATTTCTT TGCTTTTCCT TTTTTTGTGC GGTTGCAGAG AGTCAAGGGA TTGGATTGTG GATTGCATTG 001600 001601 GTGGTTTTCC TCAGTTTCCT CATCTTCTCC ACAAGTTTCT ACATATCGAA TGCAGAGCAG CCCTTCTTCA AAGGACCTCC 001680 001681 TACGGAAGCT GCTAAGGAAC TCAGTCTGTA GCTCTGCGTG GAGCCATGTG TAAACACTGA ACTGAGACCT GCCACCTCCT 001760 001761 ACTACCTAAG GGCCCATTTT CATCTGATAT CATCCCCCAG AAACAAACTC ATGATGACTT CCATGTTTTT TTTAGATTAG 001840 001841 ATACATGGAG AATTTTCCTT TCCCTTAGAA TTAAAATCCT GCATTCTAAT TTTCAGTAAG CTTTTTTATT TCTGAATAAT 001920 001921 TTTAAATTTA AAGAGAAGTT GCAAAGATAG TATAGAATGT TCCCTTATAC CTGTTTTTAT TTAGAGTGAT GTTCCCAGGA 002000 002001 GAAATGATAA TGCAGCAATG GACAAGAACA GGAACAAGAG ACAGTCTTAC CATCTTCTTA CAATTTATAG ATGGGACAGT 002080 002081 GGAAAGAGAA GCCACATCGG GGTTGGGCAT GCAGAGACCT GGTCCTAAAT CTGTGTGACT TTTGCGAAAT CCTTTTGCCT 002160 002161 CACAGAGCTC TAGGTTCTTA TCTGTCAAAC AGGAACCAGA CCATCAGATC CGTAGAGATC CAACCAATGA AGGAGACTTC 002240 002241 GAAAACTTCA CATTGCCGTG TCAATGTGAG GTTGCTGGAT GGTTATGACA AGAAATCACA TTAAATTCAC TGGGGTAACA 002320 002321 TTGTTCATGA AACGGGATAA TGTGTTTCAG CGATGAACCA CCCATGGCCT TACTACAGAC ATATTTCCAC TTTGAAAATG 002400 002401 TGTGTGAGTG TACATGTCTG TGTGTGAGGC AGAGATTAGA AAGTGTAAAT GTGTGCGTTT TCATTTTACA CATCTTACAT 002480 002481 TTTCCTTTAA TTTGTTTGAA AGCCTGTTTT GTTTGTGGCT TCCATTCCTG GAAGTCCCAT GAGTTGTTAG TGGTGAAGAT 002560 002561 GGAACAGATG TGTCCAACCC GGGGGACTCC TGCCCTCAGG GACTGAGCAG CTGCAAACCT CTCTCTCATC TGATTCCACT 002640 002641 GTTTCTTCCA CATGTACACA TCATGAGAAA TATTGTTCAA TCAATATCTT CCCTTAAATC AACTCATATG CTTATTTACA 002720 002721 TGAATTTACC TAAAACAGAA ACTTGATATC ACTTCTGTAA ATGAAAAAAT TAAACTTTCT GGCTTTAAAT AAAGCATAAC 002800 002801 AATAATAATC ATGTC |
Predicted Small Protein
Name | ENST00000535544.1_smProtein_2339:2605 |
Length | 89 |
Molecular weight | 10209.1273 |
Aromaticity | 0.102272727273 |
Instability index | 57.6852272727 |
Isoelectric point | 6.48455810547 |
Runs | 14 |
Runs residual | 0.0277272727273 |
Runs probability | 0.0528427587251 |
Amino acid sequence | MCFSDEPPMALLQTYFHFENVCECTCLCVRQRLESVNVCVFILHILHFPLICLKACFVCG FHSWKSHELLVVKMEQMCPTRGTPALRD |
Secondary structure | LLLLLLLHHHHHHHHHHHHLLLLEEEEEEEEEEELLLEEEEHHHHHLLLHHHHHHEEEEL LLLLLLLEEEEEEHHHLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHH HHLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTT TTiiiiiiiiiiiiiiiiiiiiiiiiii |