ENST00000537908.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000537908.1

Source

Gencode19

Same with

lnc-LYZL1-3:4

Classification

intergenic

Length

2002 nt

Genomic location

chr10+:29698486..29711238

Exon number

3

Exons

29698486..29698612,29704286..29704341,29709420..29711238

Genome context

Sequence
000001 GCTGAATAGC TGAGAGGCGC ACCCGGGCGG CCAGCTGGGC TCGGAGTGCA GCGGGGTTAG GATGGACGAG GACGTGTTGC 000080
000081 ACCCTGAAGA GCCTCATCAT CGGTGAGAGT GGGGTGGGCA AGTCCAGCCT GCTCTTGAGG TTCACAGATG ATACCTTTGA 000160
000161 TCCAGAACTT GCAGCAACAA TAGACAATGC AGGAATCACA TGAACCTGTC CATCCACAGA TAAAGTGGTA AAGAAACTGC 000240
000241 CGTATTAGAT ACATGATGGT ATACTCTTCA GCCATAAAGC TTCGGGAAAC CCTGTCATCC GCAACCACGT GGAGAAACCT 000320
000321 GTCCATCCAC AGATGAAGGG ATCAGGAAGC TCTGGTATAT ATACTGAAGG GAAATGCTTT TTGGCTACCA AAATAATGAA 000400
000401 ATTTTGTTGT TTGGAGCAAC ACAGATGAAC CTGTCCATCC ACAAATGAAG ACATCAAGAA ACTCTAGTAT GTACACAAGG 000480
000481 CAAAACACTT CAGCTATCAA AATCATGACA TTATGTCACT TGGAGCAACA CAGTTGACCC GCCAAGGCAG CCTCTTCCTC 000560
000561 CATAGATGGA TGAACGCTGT GGCCGCTGCT CCTGCCTGGG CCATGCCCTG ATGCTGCCAA CACCACTGCT CCTCTATTTA 000640
000641 TAAGTCTTAG TAGAGTTGCT GACCCAGCAA TAACTGAACA GCTGATATGT ACCTCACACT AAGCCAGGCG CTTCATATGT 000720
000721 ATCTAACTTG AAAAATGCTG AGCTAGTTAC CTTAACACCA TTAACTTTTA CTTAAAAGTT TGTTTTTCTT TTTTAATCCC 000800
000801 AGTGAGCTCC AAACAAGTTT TAGGAGGCTC CCCAAAACCA GTGAAGACTT TAACTAAAAG TAGAATTTCA AAGTATTAGA 000880
000881 AACCAAACCC CAAAATTAAA TGTGAAGATC AGTGTCTGTA CTGAGCTGGC CCATCTGGTG GACACAGGAT TTGCGTTATC 000960
000961 GACTGCAATG TTACCCAGGA TTCACGATTT CTAGCATCTG TCAGGGTTAA GAAAATTGGA TTGAGTACCA AATACAGCAG 001040
001041 AGCAAACCCG GCTTTGAGGC AAGGGCCCCA TCAAGTAGTC ATGCAGTACT TTTGTTAGGG TTCTGGGTGC AAATCTTCCT 001120
001121 CGTCCCTCCC ACCTTCTCCT GGCCTCCTTG TAAACCCAAA CCGCCAGGTA CCTCAATTTT CTTCAAGACC AGGCTGTTCT 001200
001201 TAATGTTGGT AAATTGGTCA AGGAAATGGG TGAGCCACTG CTTGCTCTGC ACATCGTCCT CAGAGTGCTC GGTCTTCAGG 001280
001281 CAGTACAGCA GCTGCATGGC TTTGGCCTGC AGGAGTAAGT GGCCCATTCC TAGGCTGTCC CCAAAGATGT GTCCTCTGAA 001360
001361 GAAGCTGGTC AGGTAGAGGG GGTGTCCACT ATGGTTATAG ATGGGGAAGG AGATGCTGCC CAGGTCGAGC GTTTTGTCCA 001440
001441 CCTGCCAGGT GTACAGGAGT GGGTTGGGGG CACCACGCAG AGCATCTTGT ACCTCGCGCA CACCTGCTGG TACTGGAGCT 001520
001521 GGCTTGCGTT TCCCTGTGCC ACACGCAGAT CCTGCACTGT ACTGTCCAGT CAACTGACTT CAGCAAAGAT GTCTGGGTTC 001600
001601 AGCAGCGAGT TGCTGTGTGA GGCCACCAGA ATGGAGGTGA TATCGGCCTC AGTGCTCATC CTGGAGGTGG AGAAGTGGTC 001680
001681 AGAGTCCTCT GTGGTGAAAT GGCCCTACAC CAAAGTGGGA GACATTCAGA ATCGAGGCGA AATTGGCCTC AGTGCTCCTC 001760
001761 TTGGAGGCAG AGAAGCAGTA GGAGTCGGTG GTGAAATGGC CCTGTGTGAA TGTGGAAGAC CAGCAGATTG GAGGTGGAAT 001840
001841 TGGCCTCAGT GCTTGTCCTG GAGGTGGAGA AGCGGTCAGA GTCCTTGGTG GTGAAGTGGC CCTGCACAAA ACGTTGCTCC 001920
001921 CCCTTGGCCG GTGAAAGAAT AAAAGAAAGC TGGCCACTTG CATTTCCGTT TCAGTTTATA GAATACATGT TTTGGAAATA 002000
002001 GT
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Predicted Small Protein

Name ENST00000537908.1_smProtein_1400:1576
Length 59
Molecular weight 6089.9882
Aromaticity 0.051724137931
Instability index 67.7465517241
Isoelectric point 9.88458251953
Runs 9
Runs residual 0.0014209928003
Runs probability 0.0128854344541
Amino acid sequence MGKEMLPRSSVLSTCQVYRSGLGAPRRASCTSRTPAGTGAGLRFPVPHADPALYCPVN
Secondary structure LLEEELLLLLEEEHHHEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEELLL
PRMN -
PiMo -