ENST00000537961.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000537961.1 |
Source |
Gencode19 |
Same with |
lnc-SLC6A12-1:1,NONHSAT025306 |
Classification |
antisense |
Length |
1038 nt |
Genomic location |
chr12-:276168..291565 |
Exon number |
2 |
Exons |
276168..276873,291234..291565 |
Genome context |
|
Sequence |
000001 TTCTGGCAGA ACCACTTCTG GACCTGTCCC TCTGCACCCC CCATTCCTGC GCCCTCATTT AACCTCCCTG ACTCTGACCT 000080
000081 GGGCTTGGTC TATCTTGGGG CCTGGCTGCC GTCCTGGGAC GGGAAGGGGA GCAGATCAGA ACTCAGCCTG CGGCTCCAGG 000160 000161 CCGCTGGGCG CTGGCTGGGC CTCACGTTCT CCTGGAAGGA CCACCTCCCT TGCCCTCCAC GGGGTCTGCC TTTGCTCCCA 000240 000241 AGGCTCCGCC CTGGACGGAG CGTCCTTCTT GCCTGGGCGT CTTCAGACCT TCATCTGTGA CACCGGGGGC CATGTGGCTC 000320 000321 ACCCCGAGGA AGAGACGAGG ACTCGCTGTG TTGGCTGTTC TTGAGCTTCT GGGCTCAAGC AATCCTCCCT CCTGAGCTTC 000400 000401 CCAGAGTGCT AGGATTACAG GTGTGAGCCA CTGAGCCCAG CCCATTTTCT TTTTTTTTTT TTTCCTGGCT TCCTTTCCTC 000480 000481 CCTGTCTCCC TGGCCTACCC TTCCTCTTCC CTCAGCTGTT CCTTCCCTTT CTCTCCAGTG AAGACTAAGG GCCAAGCATG 000560 000561 AGCCTTTCTT CCTGCTCTTT TACCCTTGAG GCAGCAGGAG AGGATATTCA CCTCCTGACA TGACAGATTC TGACGCTATC 000640 000641 TGCTCCTCTG TGACTTTGGG AAGCGGGGTA TGTGCTGCTC CTGGGCTGAT GGGGGAAAGT GCCTCTCCCA GCAATGCTGG 000720 000721 TGCCACTTGG TGTGCTACGG CCCCCCAGGG CAGTGCGGAG CCATCTGGGA CAGTTAGACA ATGAGAGACG TGAAGCCATT 000800 000801 TCAAGGTGCT TCCTTGAAAA TGCTCCAGAA AAACAGCAGA GGCGGCCTCT CTGGGGATCC GGTCCAGCCC TTGAAAAGAA 000880 000881 TCTGTTTGTT TCACCACTGA ACTCAAATAA GCCAACAGAT TGAAGGAAGG GAGTTTCCAC GCGCCCCTCC CCACCAAGCA 000960 000961 GTTACCTGAG TTCCAGAGTC CAGTCCGATG GATCCCATTT TACCCTGGTT TAAATTGTTT CCTTAGAAAA AAATAAAC |
Predicted Small Protein
Name | ENST00000537961.1_smProtein_713:922 |
Length | 70 |
Molecular weight | 7801.8853 |
Aromaticity | 0.0434782608696 |
Instability index | 73.4362318841 |
Isoelectric point | 10.2470092773 |
Runs | 11 |
Runs residual | 0.0200889654183 |
Runs probability | 0.0420581008816 |
Amino acid sequence | MLVPLGVLRPPRAVRSHLGQLDNERREAISRCFLENAPEKQQRRPLWGSGPALEKNLFVS PLNSNKPTD |
Secondary structure | LLLLLLLLLLHHHHHHHHLLLLHHHHHHHHHHHHHLLLHHHLLLLLLLLLHHHHLLLEEL LLLLLLLLL |
PRMN | - |
PiMo | - |