ENST00000539975.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000539975.1 |
Source |
Gencode19 |
Same with |
lnc-WDR74-1:21,NONHSAT021832 |
Classification |
intergenic |
Length |
955 nt |
Genomic location |
chr11-:62619492..62622708 |
Exon number |
7 |
Exons |
62619492..62620153,62620283..62620311,62620547..62620587,62621024..62621062,62621273..62621305,62621490..62621536,62622605..62622708 |
Genome context |
|
Sequence |
000001 GAAGGGTGTT ATTTTTTCAG ATGTTCAGCC CACAAGAGCT TACTGGTGAA GGAATGGGAC AAGACCCATC TTTATGCAAA 000080
000081 GCCAGCGTTA CAGTAATGTT CCAGGAGCAG CTTGTTGCTA TATACCATTG AAAAGCCTTC AGAGCTGAGA GGTACTACTA 000160 000161 ACCAATAACC TGCTTGGCTC AAAGGGCCAG CACCTTCTCT CTAAAGCCCA AGAGGAGTTT GAGGAAAACT AGGTGTCTGT 000240 000241 GTTCACTCCA GGCTGAAGTT ACAGGTCTGA GCAAATAAGG TGTATAAAAA ATGGAATCTG TCTTGGAGGA CATCAGAAGG 000320 000321 TGAATTTTCC AAGTTCTTGG ACAACCTAGC TGTTGAAAAG CTTTCTGGGT TTGGGGGGTA TTTCAGATGT ACCTTAAAGT 000400 000401 GTTAGCAGAC ACAGATTAAG ACACTGGGAG CCAATGAAAC AGCAGTTGAG GGTTTGCTGT GTATCACATT TCTGTATTTT 000480 000481 ATCACCCCCT TCCTGCAACA TTATTTATCT GGAATCTACC TGCCCTTTTG TTTTTTAGAT ACAAGGGCTT GGTTTTGTTA 000560 000561 CCCAGGCTGG TTTCAAGGCC ATAGCTTTAA GAGATCCTCT CACCACAGAT TTCCAAAGTG CTGGGATTGC AGGTGTGATT 000640 000641 CATGGCACCC AGACTTTGCT GCCTTTCTTA CATGATCCAG GCCCAGAACC CAAACTCAGG CACTGTATAG ATGACCACTT 000720 000721 TCGTAAACTA CTGACCTAGC TTGTTGCCAA TTGTTGATTG AACTTCCCAT AACTCCACTT CGTGTCTGTT CCTCTGTATA 000800 000801 CAGCCACCTT CTGTTCCCGT CATGAGCCTT TAGGTCTCCA TTTGCATATT GCAAATACTA TGTTCCATGT AGGTAGCTCA 000880 000881 TTCAGGGCCT TGCTCTTCAC TTCAAAAAAG GTTCCCTTGA GGACTGGCTG TCAATTTGTG TTGCTGTGTT GGTTG |
Predicted Small Protein
Name | ENST00000539975.1_smProtein_20:130 |
Length | 37 |
Molecular weight | 3973.528 |
Aromaticity | 0.0833333333333 |
Instability index | 50.6444444444 |
Isoelectric point | 4.39630126953 |
Runs | 6 |
Runs residual | 0.0137917637918 |
Runs probability | 0.0151769416475 |
Amino acid sequence | MFSPQELTGEGMGQDPSLCKASVTVMFQEQLVAIYH |
Secondary structure | LLLLLLLLLLLLLLLLHHHHLLEEHHHHHHHHHHLL |
PRMN | - |
PiMo | - |