ENST00000540136.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000540136.1 |
Source |
Gencode19 |
Same with |
lnc-SLC6A12-2:1,NONHSAT025303 |
Classification |
antisense |
Length |
1101 nt |
Genomic location |
chr12-:273830..275487 |
Exon number |
2 |
Exons |
273830..273920,274478..275487 |
Genome context |
|
Sequence |
000001 TAAAAGAGAG TGAAGAAATG AGGCCAACCA GATGCAGTGT ACAGACTTGG GCCACAGTGG GGGAGGTGAC AGCAGACGGT 000080
000081 TTGGTGGGAA GGAACGCACC AGAGCCCCAT GGGCCTGCCT GGCCAGCTCG CTTGGTCATC CTGGTAAAAC AGCAGAGCTC 000160 000161 TCTGTTCCAA GAGGCCCACG CGCAGCCCCA CATGCCTGCT GATCTGTGTA CACACGTGTG TGCACTCTAG CAAGCCTCAC 000240 000241 TTTAATTGTG AAGAAACATG GGAACCGGTG CTCCCACCCG GGCTGTGGGA GTGTGGTGCG GTGGGGCCTG GACACGGGGA 000320 000321 GGGTCCGAAG TGGGGCCAGC TCCCTGGAGT CAGGCATGTC TGTCTCAAGC TGCCCCTGTC CCTTGCTGAA TGGGAACCCC 000400 000401 CACCAGCTGC CTCGGGAGCC CGTGTCCTTA CACTCTATTC GGATCTGCTC CAGCTCCGTC ACCTCAGCAA TGGACTCCTT 000480 000481 CAGGTCCTCC ACGAACTTCT GCATCTCGTC CGAGCCCAGG GCACAGAAAT GCAGCACCTG CTTCTTCTCG GAGCCCGAGA 000560 000561 GCGGGGTCAC CAGTGTGATG CCATGAGAGT AATCTGGAAA GCAGACCCCA GGCCCCCAGT GGGCTGTGAG CAGCAGCAGC 000640 000641 CGAGGGCCAG AGCCAGCCAG ACATGAGGAG GGCACGGGGT CTCATGCCTC CACCCACTCT GCTGTCCAGC CCTTCTCCCT 000720 000721 CAACTCGCCC CAGCCATTTC ATCCATTCAT TCCTTCTCAA AGACTTACAC TGGCTGTCAA AGACTTACAC TCGTTCTCAA 000800 000801 AGAGCTGGAA CTGCATGCCC AGCAGGCCAA CTGACTTGCA AAAGGTGTAC GTGGAGGAGC TCTTCTTCTT CGGGCAAAGT 000880 000881 TTGAGAATCT GTTCAGGAGA GGGAAACAGG CATGCCCTGA TGAACAGACA CTCACGGACA CATGGATGCA CAAACACCCG 000960 000961 GGGGATGCAC GATCACACAA ACCCACGCAG TGATGAATGT GCACATACAG CTTCTGTGAG CTGAGCCCTG GAGATACAGG 001040 001041 AGAACTCAGG ACAGAGCCCC TGCCCTTAAG GTGCTTATGG AATGTGGAGT GTCACAGTGT C |
Predicted Small Protein
Name | ENST00000540136.1_smProtein_662:883 |
Length | 74 |
Molecular weight | 8114.3199 |
Aromaticity | 0.0684931506849 |
Instability index | 91.1890410959 |
Isoelectric point | 11.5629272461 |
Runs | 7 |
Runs residual | 0.0482545293858 |
Runs probability | 0.0362883892295 |
Amino acid sequence | MRRARGLMPPPTLLSSPSPSTRPSHFIHSFLLKDLHWLSKTYTRSQRAGTACPAGQLTCK RCTWRSSSSSGKV |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLEEL EEEEEEELLLLLL |
PRMN | - |
PiMo | - |