ENST00000546714.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000546714.1

Source

Gencode19

Same with

lnc-PWP1-1:2

Classification

antisense

Length

1680 nt

Genomic location

chr12+:108130366..108153745

Exon number

5

Exons

108130366..108130724,108131799..108132266,108132904..108133441,108152052..108152169,108153549..108153745

Genome context

Sequence
000001 AACACAAATA CGATGGAAAG CCACCAGAGA TGTATGAGTG GAGACAGGCA CAATCTGACT TATATTTGAA ATGGATTGCT 000080
000081 CTGGCACTGC GGACAGAAAA CTGTGTGTAT GTGTGTTCAT CTGTGTTGCG GAGTAGATGA GGAGAAACAG CAAGTAGTGG 000160
000161 CAGGGAGATC AACTGGGAGG CTACTGAAGC CATCCATAGA AGAAAAGCTG GTGGTCTGGA CAAGGTGTTA GTTGAATGAA 000240
000241 GGAAGGAAGG AAAAACTGAG TTGAGAATTA CTTCAAGGTG TTTGGCTTGA CCATTGAGGT GAATAATGGT GGTGCCATTT 000320
000321 AATGAGCTGC TCAGCACTGG AGGAAATCAA ATTCATGGGA AACGTATTTT CTCACAGTCC TGGAGGCTGG AGTCAGAGAT 000400
000401 CAGGGTGCCA GCCTGGCTGG GTTCTGGTGG GGGCCCTCTT CCAGGCTTGC TCATGACTGC CTTCTCTCAC TGTGTCTCTC 000480
000481 CCGTTGTTTG AGCCACAAAA TCTGTGGTAT TTTATTATCA CAACCTGAGC TGCCTAGACA GGATGTTAAG ACTAGATGAT 000560
000561 CCGGGGATCT CTTTTGGCTC CAATATTGCA CAATTTGATG TAATATTTGA TAATTTCTGT CTAATTTTGT AAAATTTCAT 000640
000641 GCTAGCAATG GAACTAAAGA AGTCTTTGTT TTAGAATATC CTTCTGAGAG TTAGGAATGT AGATCCAGGC TCCTTGGCTG 000720
000721 TTTAGCATCT CAGGCTGCAT TGTGATAAGG AAGCAGACAG AAGAACTGGT ATCAAAGCCA AGTGTTTATC CAAATTCTAC 000800
000801 ATTAAGAATA TAACGTTTTC AGTGAAGGTT TTTGTAGATG TGAAAAAAGA GTACATGTGA AAAGTAAGAA AAAGAAAGCC 000880
000881 AACAACTGAA ATCTTCCAGG ATAACACCAA AAAAAGTGTT CCAACCTTGG CTTGGCTACA TGGAACACAG AAGGCATCTA 000960
000961 CCATGGTACC AAGGCATGAA ACAGATGAGC CAGGACTCCC CAGCCCTTCA ATCAGCAGGT GGGCTGCAGC CACACAAAGG 001040
001041 CTCACCACCT GAGGAACGAC GTCTTGGCTG CAGGGTAACT TACTGAGTGT GGATGAGCAC GTGCTGCTTG AGGTCCTGCC 001120
001121 TCCGCATAAA CAACTTGTCA CAGTAATCAC ACTTAAGATT CTTCTCCCCA GTGTGGATAA CCATGTGGGA CTCCAGGTGA 001200
001201 GCCTTCTGGG TGAAAGACTT GTCACACAAG GTACACCTGT AGTTCTTCTG ACCTGCAATC AGCCCAAAGT ATTACACCGT 001280
001281 GAAGAAAACA ACTGCTGGCA TCCCCAAGAC ACACAGGCAC ACATATGTGC ATGCAGCAGA GGCAGGAATG AAACAGAGCT 001360
001361 GACTGGGTCT TGCTCAGTAG CTGCAAGCTG GAGTGCAGTG GCGTGATCAC AGCTGACTGC TGCCTCTACC TCCTAGGCTC 001440
001441 ATGAGATCTT CCCACCTCAG CCCCCAAGCA GCTGGGACCA CAGATTCTAA GAAGCAATCC CGGAAGAAGG CAAGAATCAA 001520
001521 GATACTAAGC TCTATCTTCC CTACTCATTT AGGGTAAAAT AATTTCCTAC ACAGTTCTAC AGTTTATGTG TGTGTTTCTA 001600
001601 ACTGACCTAT GCAACCATCT GCCAGTTGCT GATTTTACAC CTTTTTCTTC GCATAAAATA TAATAAACTA ACTGAAATGC 001680
[back to top]

Predicted Small Protein

Name ENST00000546714.1_smProtein_305:490
Length 62
Molecular weight 6562.5581
Aromaticity 0.0819672131148
Instability index 62.4557377049
Isoelectric point 8.02142333984
Runs 11
Runs residual 0.0275108347466
Runs probability 0.0450289862055
Amino acid sequence MVVPFNELLSTGGNQIHGKRIFSQSWRLESEIRVPAWLGSGGGPLPGLLMTAFSHCVSPV
V
Secondary structure LEELLLLEELLLLLEEEEEEEEEEEEEEEEEEEEEEEELLLLLLLHHHHHLHHHHLLLLL
L
PRMN -
PiMo -