ENST00000546714.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000546714.1 |
Source |
Gencode19 |
Same with |
lnc-PWP1-1:2 |
Classification |
antisense |
Length |
1680 nt |
Genomic location |
chr12+:108130366..108153745 |
Exon number |
5 |
Exons |
108130366..108130724,108131799..108132266,108132904..108133441,108152052..108152169,108153549..108153745 |
Genome context |
|
Sequence |
000001 AACACAAATA CGATGGAAAG CCACCAGAGA TGTATGAGTG GAGACAGGCA CAATCTGACT TATATTTGAA ATGGATTGCT 000080
000081 CTGGCACTGC GGACAGAAAA CTGTGTGTAT GTGTGTTCAT CTGTGTTGCG GAGTAGATGA GGAGAAACAG CAAGTAGTGG 000160 000161 CAGGGAGATC AACTGGGAGG CTACTGAAGC CATCCATAGA AGAAAAGCTG GTGGTCTGGA CAAGGTGTTA GTTGAATGAA 000240 000241 GGAAGGAAGG AAAAACTGAG TTGAGAATTA CTTCAAGGTG TTTGGCTTGA CCATTGAGGT GAATAATGGT GGTGCCATTT 000320 000321 AATGAGCTGC TCAGCACTGG AGGAAATCAA ATTCATGGGA AACGTATTTT CTCACAGTCC TGGAGGCTGG AGTCAGAGAT 000400 000401 CAGGGTGCCA GCCTGGCTGG GTTCTGGTGG GGGCCCTCTT CCAGGCTTGC TCATGACTGC CTTCTCTCAC TGTGTCTCTC 000480 000481 CCGTTGTTTG AGCCACAAAA TCTGTGGTAT TTTATTATCA CAACCTGAGC TGCCTAGACA GGATGTTAAG ACTAGATGAT 000560 000561 CCGGGGATCT CTTTTGGCTC CAATATTGCA CAATTTGATG TAATATTTGA TAATTTCTGT CTAATTTTGT AAAATTTCAT 000640 000641 GCTAGCAATG GAACTAAAGA AGTCTTTGTT TTAGAATATC CTTCTGAGAG TTAGGAATGT AGATCCAGGC TCCTTGGCTG 000720 000721 TTTAGCATCT CAGGCTGCAT TGTGATAAGG AAGCAGACAG AAGAACTGGT ATCAAAGCCA AGTGTTTATC CAAATTCTAC 000800 000801 ATTAAGAATA TAACGTTTTC AGTGAAGGTT TTTGTAGATG TGAAAAAAGA GTACATGTGA AAAGTAAGAA AAAGAAAGCC 000880 000881 AACAACTGAA ATCTTCCAGG ATAACACCAA AAAAAGTGTT CCAACCTTGG CTTGGCTACA TGGAACACAG AAGGCATCTA 000960 000961 CCATGGTACC AAGGCATGAA ACAGATGAGC CAGGACTCCC CAGCCCTTCA ATCAGCAGGT GGGCTGCAGC CACACAAAGG 001040 001041 CTCACCACCT GAGGAACGAC GTCTTGGCTG CAGGGTAACT TACTGAGTGT GGATGAGCAC GTGCTGCTTG AGGTCCTGCC 001120 001121 TCCGCATAAA CAACTTGTCA CAGTAATCAC ACTTAAGATT CTTCTCCCCA GTGTGGATAA CCATGTGGGA CTCCAGGTGA 001200 001201 GCCTTCTGGG TGAAAGACTT GTCACACAAG GTACACCTGT AGTTCTTCTG ACCTGCAATC AGCCCAAAGT ATTACACCGT 001280 001281 GAAGAAAACA ACTGCTGGCA TCCCCAAGAC ACACAGGCAC ACATATGTGC ATGCAGCAGA GGCAGGAATG AAACAGAGCT 001360 001361 GACTGGGTCT TGCTCAGTAG CTGCAAGCTG GAGTGCAGTG GCGTGATCAC AGCTGACTGC TGCCTCTACC TCCTAGGCTC 001440 001441 ATGAGATCTT CCCACCTCAG CCCCCAAGCA GCTGGGACCA CAGATTCTAA GAAGCAATCC CGGAAGAAGG CAAGAATCAA 001520 001521 GATACTAAGC TCTATCTTCC CTACTCATTT AGGGTAAAAT AATTTCCTAC ACAGTTCTAC AGTTTATGTG TGTGTTTCTA 001600 001601 ACTGACCTAT GCAACCATCT GCCAGTTGCT GATTTTACAC CTTTTTCTTC GCATAAAATA TAATAAACTA ACTGAAATGC 001680 |
Predicted Small Protein
Name | ENST00000546714.1_smProtein_305:490 |
Length | 62 |
Molecular weight | 6562.5581 |
Aromaticity | 0.0819672131148 |
Instability index | 62.4557377049 |
Isoelectric point | 8.02142333984 |
Runs | 11 |
Runs residual | 0.0275108347466 |
Runs probability | 0.0450289862055 |
Amino acid sequence | MVVPFNELLSTGGNQIHGKRIFSQSWRLESEIRVPAWLGSGGGPLPGLLMTAFSHCVSPV V |
Secondary structure | LEELLLLEELLLLLEEEEEEEEEEEEEEEEEEEEEEEELLLLLLLHHHHHLHHHHLLLLL L |
PRMN | - |
PiMo | - |