ENST00000547387.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000547387.1 |
Source |
Gencode19 |
Same with |
lnc-TUBA1C-1:3 |
Classification |
antisense |
Length |
897 nt |
Genomic location |
chr12+:49521794..49525145 |
Exon number |
2 |
Exons |
49521794..49522647,49525103..49525145 |
Genome context |
|
Sequence |
000001 CCTCCTCATA ATCCTTCTCA AGGGCAGCCA TATCTTCACG GGCCTCTGAA AACTCGCCTT CCTCCATCCC CTCACCCACG 000080
000081 TACCAGTGAA CAAAGGCACG CTTGGCATAC ATCAGGTCAA ACTTGTGGTC CAGGCGAGCC CAGGCCTCAG CAATGGCTGT 000160 000161 GGTGTTGCTC AGCATGCACA CAGCTCTCTG TACCTTGGCC AGGTCTCCAC CAGGCACCAC AGTGGGAGGC TGGTAGTTGA 000240 000241 TGCCAACCTT GAAGCCAGTG GGGCACCAAT CCACAAACTG GATGCTGCGC TTGGTTTTGA TGGTGGCAAT GGCAGCATTG 000320 000321 ACATCTTTGG GAACCACGTC ACCACGGTAC AACAGGCAGC AAGCCATGTA TTTACCATGG CGAGGGTCAC ATTTCACCAT 000400 000401 CTGGTTGGCT GGCTCAAAGC AAGCATTGGT GATCTCTGCT ACAGAAAGCT GTTCATGGTA GGCTTTCTCA GCAGAGATGA 000480 000481 CAGGGGCATA TGTGGCCAGA GGGAAGTGGA TGCGGGGGTA GGGCACCAGG TTGGTCTGGA ATTCTGTCAG GTCAACATTC 000560 000561 AGGGCTCCAT CAAATCTCAG GGAAGCAGTG ATGGAGGACA CAATCTGGCT AATAAGGCGG TTAAGGTTAG TGTAGGTTGG 000640 000641 GCGCTCGATA TCGAGGTTTC TACGACAGAT GTCATAGATG GCCTCATTGT CTACCATGAA GGCACAATCA GAGTGCTCCA 000720 000721 GGGTGGTGTG GGTGGTGAGG ATGGAGTTGT AGGGCTCAAC TACAGCTGTG GAAACCTGGG GTGCTGGGTA AATGGAGAAC 000800 000801 TCCAGCTTGG ACTTCTTGCC ATAATCAACT GAGAGACGTT CCATGAGCAG GGAGGCGAAG GCGACAGGAG CAGACACCGG 000880 000881 GTCCCGGTTA CCGTCCC |
Predicted Small Protein
Name | ENST00000547387.1_smProtein_239:460 |
Length | 74 |
Molecular weight | 8180.5146 |
Aromaticity | 0.0958904109589 |
Instability index | 50.9164383562 |
Isoelectric point | 10.4370727539 |
Runs | 12 |
Runs residual | 0.0202386212992 |
Runs probability | 0.047569628452 |
Amino acid sequence | MPTLKPVGHQSTNWMLRLVLMVAMAALTSLGTTSPRYNRQQAMYLPWRGSHFTIWLAGSK QALVISATESCSW |
Secondary structure | LLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLHHHHEEELLLLLEEEEEELLLL EEEEEEELEELLL |
PRMN | - |
PiMo | - |