ENST00000547866.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000547866.1 |
Source |
Gencode19 |
Same with |
lnc-WNT1-2:2,NONHSAT028058 |
Classification |
antisense |
Length |
2114 nt |
Genomic location |
chr12+:49392155..49412980 |
Exon number |
2 |
Exons |
49392155..49392473,49411186..49412980 |
Genome context |
|
Sequence |
000001 CAGGCGCTCC GGCCGCAAGG GAGCAGGGAG CCCTGCCAGC TGGGCCACCC GAGGGGCGTT GCGGGGCTCC GGGCGGGGTC 000080
000081 GACCCGGGGG GCTCCGTCGG GCCCCACCAG CCTTGCGCCT TTTTCGCTCG GTCTCCTTGG CCTCCCGCTC CTGCGACGCC 000160 000161 GCTTTCCTTT TCTCTTGCTC CCGAGCTCGG ACCTCGGCCA GGGGCCCCGC CCGCCAGTTG GTCGCCTCCT GCAGCACCCT 000240 000241 GGAGGCCCAG GGCCGGCGGG GCGGCGGCTG TGGGGATCCC GGGCGCGGCC CACACCTGGG ACAATGAGCA GGAACCCAGG 000320 000321 CTTTCATCAT GTTGCCCAGG CTGATGCTGA ACTCCTGAGC TCAAGCAATC CACTTGCCTT GGCCTCCCAA AGTACTGGCA 000400 000401 TTACAGGCGT GAGCCACCAC ACCTGGCTGA GTTTTCTTTT TCCTCTTTTT AACTTCTACC CCAGAGCCTA ATCCAGTACA 000480 000481 TAAAGTGTAA AGGCTAAATT AGAAAATCTA TATAAAAATG CTTTGTAAAC CATAATACAT TTACAAGTAA GTAGAATATG 000560 000561 ACATGTCATT TTAAATTTAA TGGAATTAGA CTCCTTATTT TTGTTTAAGA TTATCCTGAT TAGTCAGAAT TGGCTCCCTT 000640 000641 GCCTGGGAGA CCAACTGCGA ATCATTTTAG TACTTTGGTC GGTTTTCTTT TTGAAAACCT GAAAGAAACA ACCTCTCTGT 000720 000721 GAGCAGAGAA ACGGTGTGGC AAAGAATTAC TCTGGGCATG TAATCCAAAG CAAAGTGAAC CTGCAGTCCT TTCGTAACTA 000800 000801 CAGTAGCAGA TGATAAAAAC CAAGATGGAA AGAGTTACTC TGCCTGAAAG AAGACACATG GTTAAAAACT GTGGAGAGGG 000880 000881 AAGTGTATGG GAGGGGTTAC AGAGCGCTAG AAAAAGACTC CTGAGAGTGA GGGTGGGTGC AAACATGTAG CAGGCAACCC 000960 000961 GCAGCATCTG TGGGAGGGTG ACAGGGCCCT GCCACAATTG GTCAATGCCT GCTCGCCAAG AATGAGCTAT GCCAAAACCC 001040 001041 CTGCTTAGAG TCGCAGAGCG GGCCATGACC TAAAATTGTC CAGGGACACA TCGGCCTCTA ACACTGCAAG ATTTCCTCTT 001120 001121 TCAAGCAAAC CTCAATTCTC GGTCTTATTA AGGGAATGTG ACTTCACTGG ACGCAGTATA AAGATCTTCA GATGTCCTCC 001200 001201 TGCCGGGGAT TGCAGGGATC ACAGAAAGAC CATCGAGGTC CAGGAGCTAC CTGCAAGCGG AGATCCCTCT GGACGCCCCG 001280 001281 TGCCTCACCC AGCAAAGCCG GCTCACAACC CTGCGCTCTC AAACCTCTAA AAGGGCTTGA GGTGCCAATA GGAAAGGAGG 001360 001361 CCCGAGATTG CCACGGCATA CGTGGGCCCC AAGGAGGGAG CCAGGAGTCA CTGCCTGCTT GGGCTAAGGG TACCGCGTAC 001440 001441 GGAAAGGCGG CGGGGACGCG GCCCAGTTCC AGGAGATGCG CCCAACGAAG AAGCGGAGGA ACAGGGTCAC GGGATAGGGC 001520 001521 AGACACCCGG CTGCTTTTTG TTTGCTAGAC ACCAGCGCCA GCCCCTGCCC GGCCCTCCCG GTCTCCTAAG GGTTGGGGGG 001600 001601 GTGTCTTAGG CTCCACAGCG CCCCCGACCG CCCTCCTGCA CTCCTCACCG TCTCCATTGC AAGAGGCGCC CGGCTTGGTT 001680 001681 TCCTCGCTTT AGGAAACTCT CTTGGGGCAG GCCCCGCCCC ACATCCGGTG CGGCGACGCC ACTTCCGCCC ACGTCATGGC 001760 001761 AGTCGCCAGA CTGGGGCGGA AGGCAAGGAA CCCACCCTTC CGGCGGTGGC GGGCCTCGGT AACCGCCCTC CCCCGGGTCC 001840 001841 TCGCGGACCG CACGGATCCG GCTGACGGCG AGGGTCATGG GACGGAGCCG CTTGTATTTA AAATGTTCTT TTTTTATTTG 001920 001921 TCGTTTAAAA ACAAACTTGG AAGAAGCAAA ATCCAAAACT TGCCCTTTGC CTCTCGCAAC ATAAATATGT ACAGTTCAGA 002000 002001 ATGATCGCTG ATACAAAACA TGCCAAGGAC AGGGGCGCTG AGGGTGGAGG GAGAGAGGGC GCTTTAAAAA AGGGAACCAT 002080 002081 TTCATCCGTT GTTACGAAGG ACCAACCTTG CTGT |
Predicted Small Protein
Name | ENST00000547866.1_smProtein_809:949 |
Length | 47 |
Molecular weight | 5353.3525 |
Aromaticity | 0.0217391304348 |
Instability index | 59.1130434783 |
Isoelectric point | 11.3118286133 |
Runs | 8 |
Runs residual | 0.0125517598344 |
Runs probability | 0.0349430312666 |
Amino acid sequence | MIKTKMERVTLPERRHMVKNCGEGSVWEGLQSARKRLLRVRVGANM |
Secondary structure | LLLLLEEELLLHHHHHHHHLLLLLLHHHHHHHHHHHHHHEEELLLL |
PRMN | - |
PiMo | - |