ENST00000548087.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000548087.1 |
Source |
Gencode19 |
Same with |
lnc-C14orf23-1:2,NONHSAT036168 |
Classification |
intergenic |
Length |
776 nt |
Genomic location |
chr14+:29299453..29306923 |
Exon number |
3 |
Exons |
29299453..29299708,29301212..29301266,29306459..29306923 |
Genome context |
|
Sequence |
000001 CAGCTTCCGG AGCAGCTGGG ACTGCTGGCG CCCGCCACTA CGCTCGGCTA ATTTTTTTGT GTTTTTAGTA GAGACGGGCT 000080
000081 TTCACCGTGT TGGCCTAGCG GTTCTCCAAC TCCTGACCTC ATGATCCCCC CGCCTCAGCC TCCCAAAGTG CTGGGATTAC 000160 000161 AAGCGTGAGC CACCGCGACC CGCCAACACT CTTGACAACA GTGCTGTGCT AAGAACTTGG GGGACTTCAA AAAGTTCACC 000240 000241 AGTTCCTGTG TCCATGGGTG AAAAGATTTT CTACATCTTT CCTTGACTAG AAACAGAAGT CCTGAAACAA GAATATAACG 000320 000321 TCAGGAGGCC AGAGGCTTTG TCCTGCCTAA TGTGTTATTT CCACACTGAA TAAAAGCACC TGAGTCCTGG TAAGTGCTCA 000400 000401 TATGATTGGC TCAATAAAAG AATAATAAAT GAATTGGAAA GAGGAGACAG TGAAGGATAT AGGAGATGTA CCTGATAGCA 000480 000481 ACTTACTGCC TCTCAGCTCA AAATTCACCC TTCAAAACCT TTTCTACACC AATGGATAGA ATTCCTGTCA GCATTTCTCT 000560 000561 TTTACGTTGA ACACAATGTT AAGCTTCCTC AGTGAAGGAC CCTAGATGGA CATTGCAGGA AGAAGGGACT TCCCCTGTTG 000640 000641 GACCTAGAGG TTGTACCAGC ATTGTAGGTG GGAGGACATC CACTGGCTCT TTGCAATAGC CATGTGTCCA TAAAGTATAG 000720 000721 TTTCTCAGCA ATCTCATTGC CCAGTCTAGG CTTGGCAATC ACCCTCCTGC AGCCTT |
Predicted Small Protein
Name | ENST00000548087.1_smProtein_428:538 |
Length | 37 |
Molecular weight | 4115.5729 |
Aromaticity | 0.111111111111 |
Instability index | 41.8058333333 |
Isoelectric point | 4.43695068359 |
Runs | 6 |
Runs residual | 0.0137917637918 |
Runs probability | 0.0351969616675 |
Amino acid sequence | MNWKEETVKDIGDVPDSNLLPLSSKFTLQNLFYTNG |
Secondary structure | LLLHHHHHHHHLLLLLLLLLLLLLHHHHHHEEEELL |
PRMN | - |
PiMo | - |