ENST00000548087.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000548087.1

Source

Gencode19

Same with

lnc-C14orf23-1:2,NONHSAT036168

Classification

intergenic

Length

776 nt

Genomic location

chr14+:29299453..29306923

Exon number

3

Exons

29299453..29299708,29301212..29301266,29306459..29306923

Genome context

Sequence
000001 CAGCTTCCGG AGCAGCTGGG ACTGCTGGCG CCCGCCACTA CGCTCGGCTA ATTTTTTTGT GTTTTTAGTA GAGACGGGCT 000080
000081 TTCACCGTGT TGGCCTAGCG GTTCTCCAAC TCCTGACCTC ATGATCCCCC CGCCTCAGCC TCCCAAAGTG CTGGGATTAC 000160
000161 AAGCGTGAGC CACCGCGACC CGCCAACACT CTTGACAACA GTGCTGTGCT AAGAACTTGG GGGACTTCAA AAAGTTCACC 000240
000241 AGTTCCTGTG TCCATGGGTG AAAAGATTTT CTACATCTTT CCTTGACTAG AAACAGAAGT CCTGAAACAA GAATATAACG 000320
000321 TCAGGAGGCC AGAGGCTTTG TCCTGCCTAA TGTGTTATTT CCACACTGAA TAAAAGCACC TGAGTCCTGG TAAGTGCTCA 000400
000401 TATGATTGGC TCAATAAAAG AATAATAAAT GAATTGGAAA GAGGAGACAG TGAAGGATAT AGGAGATGTA CCTGATAGCA 000480
000481 ACTTACTGCC TCTCAGCTCA AAATTCACCC TTCAAAACCT TTTCTACACC AATGGATAGA ATTCCTGTCA GCATTTCTCT 000560
000561 TTTACGTTGA ACACAATGTT AAGCTTCCTC AGTGAAGGAC CCTAGATGGA CATTGCAGGA AGAAGGGACT TCCCCTGTTG 000640
000641 GACCTAGAGG TTGTACCAGC ATTGTAGGTG GGAGGACATC CACTGGCTCT TTGCAATAGC CATGTGTCCA TAAAGTATAG 000720
000721 TTTCTCAGCA ATCTCATTGC CCAGTCTAGG CTTGGCAATC ACCCTCCTGC AGCCTT
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Predicted Small Protein

Name ENST00000548087.1_smProtein_428:538
Length 37
Molecular weight 4115.5729
Aromaticity 0.111111111111
Instability index 41.8058333333
Isoelectric point 4.43695068359
Runs 6
Runs residual 0.0137917637918
Runs probability 0.0351969616675
Amino acid sequence MNWKEETVKDIGDVPDSNLLPLSSKFTLQNLFYTNG
Secondary structure LLLHHHHHHHHLLLLLLLLLLLLLHHHHHHEEEELL
PRMN -
PiMo -