ENST00000553760.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000553760.1 |
Source |
Gencode19 |
Same with |
lnc-TSHR-5:3,NONHSAT038086 |
Classification |
intergenic |
Length |
773 nt |
Genomic location |
chr14+:83108971..83124110 |
Exon number |
3 |
Exons |
83108971..83109018,83117268..83117340,83123459..83124110 |
Genome context |
|
Sequence |
000001 TGTGTGATGG GGCCGGAGCC AGTAAACAGG CTTCCTTCTC GCTCTGCTGT ATAAGAAGAA GAAGTAGGAG AAACAAAATA 000080
000081 AGGAGGAGAA GAAGTAAAAT AATTTGAGAA GGAATATGAA GAAACTGAAA CTAGCCTGAG AAGGAAGATA CTGAGTCAGA 000160 000161 TGGAGCCATT TATATATGGA GATCCAGGAT TTATAAGATC CATACCATTG AATTTGAAGT AAGGATACGA TCAAGCTGAT 000240 000241 AATCCAAAGT GCACTAACTT CTAAGGACGG AAATGTTTCT CTGGGGCTAT CATTGCACCC TCGCTCTCTG GAATTTCGGT 000320 000321 ATCATGAGAA CACATAAGTA AGAGCCAAAA TTCATAGGGA TTCTGCCTGG AGAGGAACAC AGGGATTCTG AAATAACCAT 000400 000401 GACATACATA AGTACCTCCA ATTATTTGCC TCTCAGACAA AGCCAGCAGC TGTTGAAATA TGGTAAGAAA AATGGTTCAG 000480 000481 GGGTTTTCCC CCATGACTCA AGACAAGCAT TTACATTATT TACACACTCA ATGTCTCTTC TGACTTATGA TTGCCTTACA 000560 000561 ATCTATGGAA TATATTTAGT GTCCCTGTGG AAGCAATTAT ACATGAAACA TCAACATATA TTTATATAGT AGACAGCACT 000640 000641 TTCATAGGTC CCTGCAGTGT ATTTTAACAG TAGTGGAAAC TAAAGTTTTG GTGTAATGTG TTTTTATCTA TCATTCAGAT 000720 000721 CAAAGAATAC CCAGTACTTG AAAAGTTTAG AAAGCAGTTG AAAGTTACAT AGA |
Predicted Small Protein
Name | ENST00000553760.1_smProtein_398:628 |
Length | 77 |
Molecular weight | 8966.3479 |
Aromaticity | 0.157894736842 |
Instability index | 59.7368421053 |
Isoelectric point | 9.56280517578 |
Runs | 11 |
Runs residual | 0.00332728372656 |
Runs probability | 0.0299417064123 |
Amino acid sequence | MTYISTSNYLPLRQSQQLLKYGKKNGSGVFPHDSRQAFTLFTHSMSLLTYDCLTIYGIYL VSLWKQLYMKHQHIFI |
Secondary structure | LEEEELLLLLLHHHHHHHHHHLLLLLLLLLLLLLHHHHHHHHHHHLHHHHHHHHHHHHHH HHHHHHHHHHHLLEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHH HHHLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTT TTTiiiiiiiiiiiii |