ENST00000557101.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000557101.1 |
Source |
Gencode19 |
Same with |
lnc-CTAGE5-3:1,NONHSAT036558 |
Classification |
intergenic |
Length |
547 nt |
Genomic location |
chr14+:40856762..40858344 |
Exon number |
2 |
Exons |
40856762..40857244,40858281..40858344 |
Genome context |
|
Sequence |
000001 TTCTGCTTTA GAGCATGTAA AAAATTAGAG ATAACAAAAT GACACTTAAT AGACGCTGGA CATGTAGAGG GAAATGTAGC 000080
000081 TTTTAAAGAC ATTTTTCTTC TATTCCTGGC AAAAGTAAGC GAGGGAAAGG TGAATGTAGC AGGTACAAAT CACACAGGCA 000160 000161 GAAAATACAG AGGAAAGACC TAAAGCCTAA CTCAATTCTA TGGATTTTAA TTATGGAAAT CTGGCCAAGT CACTCCCCTC 000240 000241 CTTGCAGGGA TTGTTATTAC TTTATTATGA AAAAATTGAA ACAGTTGTCT TCTCTACTGC ACAGGGTTGT GGCAAAAACA 000320 000321 AAATGGCATT GTGAATGTAA AAGTTCATTA AAAACTCTAA AATGTGATAG CATAATGTAA ACCACTTTTT TTTTTTTTTT 000400 000401 TTTTCCAAAA CGGAGTCTCG CTCTGTCGCC CAGGCTGGAG TGCAGTGGCG CGATTTCGGC TCACTGCAAG CTCCGCCTCC 000480 000481 CAGGAGGATG GCTTGAGCCC AGGAGTTCAA GACCAGCTGG GTCAACAAAG TAAGACCTCG TCTCAAC |
Predicted Small Protein
Name | ENST00000557101.1_smProtein_212:379 |
Length | 56 |
Molecular weight | 6529.8103 |
Aromaticity | 0.0909090909091 |
Instability index | 53.6109090909 |
Isoelectric point | 9.30145263672 |
Runs | 9 |
Runs residual | 0.0121212121212 |
Runs probability | 0.0399517164222 |
Amino acid sequence | MEIWPSHSPPCRDCYYFIMKKLKQLSSLLHRVVAKTKWHCECKSSLKTLKCDSIM |
Secondary structure | LEELLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHLLLEEELLLLHHHLLLLLLL |
PRMN | - |
PiMo | - |